Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq20 134 1e-26 seq1 132 4e-26 seq57 118 1e-21 >seq20 Length=2346360 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| ||||| || ||||||||| ||||| |||||||| Sbjct 834290 CCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834349 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| |||||||| |||| ||||| || || | ||| Sbjct 834350 AGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834409 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| || ||| ||| Sbjct 834410 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834469 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || ||||||||||| ||||| |||||||| Sbjct 834470 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| ||||| |||||||| Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| |||||||| |||| ||||| || || | ||| Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| || ||| ||| Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || ||||||||||| ||||| |||||||| Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| ||||| |||||||| Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| |||||||| |||| ||||| || || | ||| Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| | ||| ||| Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || ||||||||||| ||||| |||||||| Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 >seq1 Length=5975090 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||| || ||| |||||||| ||||||||||| || Sbjct 5043161 GCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5043102 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || ||||| ||||| || || | || Sbjct 5043101 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGG 5043042 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | ||||| | | |||||| | ||| | Sbjct 5043041 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAA 5042983 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 5042982 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| |||||||| ||||||||||| || Sbjct 5043388 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043329 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| ||||| || || | || Sbjct 5043328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043269 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | ||||| | | |||||| | ||| || Sbjct 5043268 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAAC 5043210 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 5043209 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||| || ||| |||||||| ||||||||||| || Sbjct 5042933 GCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5042874 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||| || || || ||||| ||||| || || | || Sbjct 5042873 CAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGG 5042814 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | ||||| | | |||||| | ||| | Sbjct 5042813 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAA 5042755 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || || ||||| ||||| ||||| || |||||||| Sbjct 5042754 CCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 5042703 >seq57 Length=1190389 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||||||| || || |||||||||||||| ||||| || Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| || || ||||| || || | ||| Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||| ||| ||| || ||||| | | ||||| | ||| ||| Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || || || ||||||||||||||| Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 631525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462168943665200