Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq747 89.7 3e-13 seq38 86.0 4e-12 >seq747 Length=644639 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || ||||| ||||| || | || ||||| || || || ||||| ||||| Sbjct 453162 ACCACCTCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 453103 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || || | ||| || ||| || || | ||||||||| || | || Sbjct 453102 CAATGTACGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCTGGAGG 453043 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || | | | || ||| || ||| || || || |||| Sbjct 453042 AATCCCCTCTTTGTCTTGGATTTTAGC---TTTCACATTTTCGATAGTATCAGATGGTTC 452986 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| ||||| || ||||| |||||||||||||| Sbjct 452985 GACCTCTAGCGTGATAGTTTTCCCCGTGAGGGTTTTCACGAAAATTTGCAT 452935 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| || ||||| || ||||| || | || || || ||||| |||||||| ||||| Sbjct 462492 CCGCCCCTCAACCGTAAAACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAGTCAGAA 462551 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || || | ||| || || || || ||||| || || || | || Sbjct 462552 AGAGTACGTCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAACGCTGTTGATCAGGAGGA 462611 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| ||||| || | | | || ||| || ||| || ||||| || | Sbjct 462612 ATGCCCTCTTTGTCCTGGATTTTAGC---TTTAACGTTTTCTATTGTGTCAGAAGGCTCG 462668 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| ||||| || |||||||||||||||||||| Sbjct 462669 ACCTCTAGCGTGATAGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 462718 >seq38 Length=2283748 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || |||||||| |||||||| ||||| | || || || || Sbjct 1209172 ACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAGTCAGAAAGGGTGCGTCCATCTTCT 1209113 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||||| || ||| || | |||||||||||| | ||| || || || || || | Sbjct 1209112 AGCTGCTTGCCGGCAAAAATAAGACGTTGCTGGTCTGGGGGAATCCCCTCCTTGTCTTGG 1209053 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| || ||| |||| || |||||||| || || Sbjct 1209052 ATTTTGGCC---TTGACGTTCTCAATGGTATCGGATGGTTCGACTTCCAGAGTGATGGTC 1208996 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| | ||||||||||| || ||||| Sbjct 1208995 TTTCCCGTCAAGGTTTTTACGAAGATCTGCAT 1208964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318736907441652