Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_006634.1 Length=14975 Score E Sequences producing significant alignments: (Bits) Value seq848 244 1e-60 seq237 170 2e-38 seq1271 165 8e-37 seq32 84.2 2e-12 seq8133 78.8 9e-11 >seq848 Length=180487 Score = 244 bits (270), Expect = 1e-60 Identities = 188/219 (86%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 945 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCT 1004 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 111410 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 111353 Query 1005 CGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCATAATCCTTTCTCAATCCTTTC 1064 ||| ||||||||| |||| |||||||||| |||| ||||||||| |||| || Sbjct 111352 CGCTTATTCTATAAACTCCCATTAAGAAGATCCT-------TTCCTTTCTCTTTCCTATC 111300 Query 1065 C-TACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAAC 1122 | |||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||||| Sbjct 111299 CTTACCCTTTATCCTGTTACATGAATG-TGGAACGCTTCACGTAAAAATATATCCGTAAC 111241 Query 1123 TCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGT 1161 | | ||| ||||||||||||||||||||||| |||||| Sbjct 111240 TTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGT 111202 Score = 199 bits (220), Expect = 4e-47 Identities = 172/212 (81%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 1215 CTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCTCGCATA 1274 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 111404 CTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCTCGCTTA 111347 Query 1275 TTCTATACACTCACATTAAGATGATCCTCTTCACAATCCTTNNNNNNNNNNNNCCTACCA 1334 ||||||| |||| |||||||| |||||| ||| | || | |||| Sbjct 111346 TTCTATAAACTCCCATTAAGAAGATCCT-TTC-----CTTTCTCTTTCCTATCCTTACCC 111293 Query 1335 ATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAACTCCTATT 1393 |||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| | ||| Sbjct 111292 TTTATCCTGTTACATGAATG-TGGAACGCTTCACGTAAAAATATATCCGTAACTTCCATT 111234 Query 1394 CTTTCCCGCTTCGCAGCATTATTTATATTTGT 1425 ||||||||||| ||||||||||| |||||| Sbjct 111233 GTTTCCCGCTTCACAGCATTATTTTCATTTGT 111202 >seq237 Length=703356 Score = 170 bits (188), Expect = 2e-38 Identities = 142/169 (84%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 995 AATTTTTTCTCGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCATAATCCTTTCT 1054 ||||||| ||||| |||| |||| |||| |||||||||| |||| ||| |||||||| Sbjct 3213 AATTTTTGCTCGCTTATTTTATAAACTCTCATTAAGAAGGTCCTTTCCTC--TCCTTTCT 3270 Query 1055 CAATCCTTTCCT-ACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT- 1112 | |||| |||| ||| ||||||||||| |||||||| ||||| |||||||||| ||| Sbjct 3271 CTTTCCTATCCTTACCCTTTATCCTGTTAGGTGAATGT-GGAACCCTTCACGTAAAAATA 3329 Query 1113 TATCCGTAACTCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGT 1161 ||||||||||| | ||| ||||||||||||||||||||||| |||||| Sbjct 3330 TATCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGT 3378 Score = 131 bits (144), Expect = 2e-26 Identities = 131/169 (78%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 1259 AATTTTTTCTCGCATATTCTATACACTCACATTAAGATGATCCTCTTCACAATCCTTNNN 1318 ||||||| ||||| |||| |||| |||| |||||||| | |||| | | | ||||| Sbjct 3213 AATTTTTGCTCGCTTATTTTATAAACTCTCATTAAGAAGGTCCTTTCCTC--TCCTTTCT 3270 Query 1319 NNNNNNNNNCCT-ACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT- 1376 ||| ||| ||||||||||| |||||||| ||||| |||||||||| ||| Sbjct 3271 CTTTCCTATCCTTACCCTTTATCCTGTTAGGTGAATGT-GGAACCCTTCACGTAAAAATA 3329 Query 1377 TATCCGTAACTCCTATTCTTTCCCGCTTCGCAGCATTATTTATATTTGT 1425 ||||||||||| | ||| ||||||||||| ||||||||||| |||||| Sbjct 3330 TATCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGT 3378 >seq1271 Length=79403 Score = 165 bits (182), Expect = 8e-37 Identities = 136/161 (84%), Gaps = 10/161 (6%) Strand=Plus/Plus Query 945 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCT 1004 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 76514 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 76571 Query 1005 CGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCATAATCCTTTCTCAATCCTTTC 1064 ||| ||||||||| |||| |||||||||| | || | | ||||||||| |||| | Sbjct 76572 CGCTTATTCTATAAACTCCCATTAAGAAGGTACTTTTC--TCTCCTTTCTCTTTCCTACC 76629 Query 1065 C-TACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCAC 1104 | |||| ||||||||||||||||| ||||||||||||| Sbjct 76630 CTTACC----ATCCTGTTACGTGAATG-TGGAACGCTTCAC 76665 Score = 132 bits (146), Expect = 5e-27 Identities = 123/155 (79%), Gaps = 10/155 (6%) Strand=Plus/Plus Query 1215 CTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCTCGCATA 1274 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 76520 CTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCTCGCTTA 76577 Query 1275 TTCTATACACTCACATTAAGATGATCCTCTTCACAATCCTTNNNNNNNNNNNNCC-TACC 1333 ||||||| |||| |||||||| | | || ||| | ||||| || |||| Sbjct 76578 TTCTATAAACTCCCATTAAGAAGGTACTTTTCTC--TCCTTTCTCTTTCCTACCCTTACC 76635 Query 1334 AATTATCCTGTTACGTGAATGTTGGAACGCTTCAC 1368 ||||||||||||||||| ||||||||||||| Sbjct 76636 ----ATCCTGTTACGTGAATG-TGGAACGCTTCAC 76665 >seq32 Length=4451668 Score = 84.2 bits (92), Expect = 2e-12 Identities = 92/119 (77%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 12471 aaaaaaaaGACAATTTCTAGATGATTATCATTTCTGATGTTTTTCTATTTAAAATATTTG 12530 ||||||| || |||||||||||||||| ||||| |||| ||||| | || ||| | || Sbjct 2808797 AAAAAAACGAAAATTTCTAGATGATTACCATTTTTGAT-TTTTTTTCTTATAAAAAACTG 2808855 Query 12531 ACATTTTCAAT-AATTCTCGAATTTTTCGACATTGGTGTTCTGTAGACTTCAAtttttt 12588 ||||||| || ||| ||| ||||||| || ||||||| | | | ||| ||||||| Sbjct 2808856 ACATTTTTTATAAATCCTCAAATTTTT--TCAGTGGTGTTTTTTCGTTTTCTATTTTTT 2808912 >seq8133 Length=1533 Score = 78.8 bits (86), Expect = 9e-11 Identities = 98/129 (76%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 12462 AATTTATGGaaaaaaaa-GACAATTTCTAGATGATTATCATTTCTGATGTTTTTCTATTT 12520 ||||| ||||||||||| || ||||||||||| |||| || || || ||||| | ||| Sbjct 447 AATTT-TGGAAAAAAAACGAAAATTTCTAGATAATTACCA-TTAAAATTTTTTTTTGTTT 504 Query 12521 AAAATATTTGACATTTTCAAT-AATTCTCGAATTTTTCGACATTGGTGTTCTGTAGACTT 12579 ||| || ||||||||| || ||| ||| || |||| | | ||||||| | | | || Sbjct 505 TAAAAATCTGACATTTTTTATAAATCCTCAAAATTTTTCAGAATGGTGTTTTTTCGTTTT 564 Query 12580 CAAtttttt 12588 | ||||||| Sbjct 565 CTATTTTTT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47795810957356