Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq101 113 9e-21 seq167 109 1e-19 seq110 96.9 7e-16 >seq101 Length=1672674 Score = 113 bits (124), Expect = 9e-21 Identities = 135/183 (74%), Gaps = 24/183 (13%) Strand=Plus/Plus Query 6597 GGCCGCTGCGCTAAACAAAGTTGCCACATTCCGGCTACGTCGAGCAGAAAAATAGTATAC 6656 ||||||||||||||||||| ||| | ||||||| | ||||||| |||||| ||| || Sbjct 1635787 GGCCGCTGCGCTAAACAAAATTGATCCTTTCCGGCGCCATCGAGCAAAAAAATTGTACAC 1635846 Query 6657 ACACCTTGGCCAGTAAAAAGTAAAGCCTCAGATCACATGTTTGTCAACCTCGGCTTCGCC 6716 |||||| || |||||||| |||||||||||||||||| ||| || Sbjct 1635847 ACACCTCGGAAAGTAAAAAAGAAAGCCTCAGATCACATG-----CAA-------TT---G 1635891 Query 6717 TCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTACTGGCCTAGGTATGTAAT 6776 ||||||| | |||| | ||| ||||||||||||||| ||||||| |||||| Sbjct 1635892 TCGGCCA--------AGGTGAAGT-CGACATTTCTTATTTTACTGCCCTAGGTGTGTAAT 1635942 Query 6777 ATA 6779 ||| Sbjct 1635943 ATA 1635945 Score = 113 bits (124), Expect = 9e-21 Identities = 135/183 (74%), Gaps = 24/183 (13%) Strand=Plus/Minus Query 6007 TATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGCTGGC 6066 ||||||||| ||||||| ||||||||||||||| ||| ||| || | |||| Sbjct 1635945 TATATTACACACCTAGGGCAGTAAAATAAGAAATGTC---GACTTCACCT------TGGC 1635895 Query 6067 CGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCCAAGG 6126 ||| ||| ||| |||||| ||||||||||| |||||||| || ||| Sbjct 1635894 CGA--------CAA--TTG-----CATGTGATCTGAGGCTTTCTTTTTTACTTTCCGAGG 1635850 Query 6127 TGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGCGCAGCG 6186 ||||| ||| |||||| ||||||| | ||||||| | ||| |||||||||||||||| Sbjct 1635849 TGTGTGTACAATTTTTTTGCTCGATGGCGCCGGAAAGGATCAATTTTGTTTAGCGCAGCG 1635790 Query 6187 GCC 6189 ||| Sbjct 1635789 GCC 1635787 >seq167 Length=793021 Score = 109 bits (120), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 24/181 (13%) Strand=Plus/Plus Query 6007 TATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGCTGGC 6066 ||||||||| ||||||| ||||||||||||||| ||| ||| || | |||| Sbjct 209723 TATATTACACACCTAGGGCAGTAAAATAAGAAATGTC---GACTTCACCT------TGGC 209773 Query 6067 CGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCCAAGG 6126 ||| ||| || ||||||| ||||||||||| |||||||| || ||| Sbjct 209774 CGA--------CAA--TT-----ACATGTGATCTGAGGCTTTCTTTTTTACTTTCCGAGG 209818 Query 6127 TGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGCGCAGCG 6186 ||||| ||| |||||| ||||||| | ||||||| | ||| |||||||||||||||| Sbjct 209819 TGTGTGTACAATTTTTTTGCTCGATGGCGCCGGAAAGGATCAATTTTGTTTAGCGCAGCG 209878 Query 6187 G 6187 | Sbjct 209879 G 209879 Score = 109 bits (120), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 24/181 (13%) Strand=Plus/Minus Query 6599 CCGCTGCGCTAAACAAAGTTGCCACATTCCGGCTACGTCGAGCAGAAAAATAGTATACAC 6658 ||||||||||||||||| ||| | ||||||| | ||||||| |||||| ||| |||| Sbjct 209879 CCGCTGCGCTAAACAAAATTGATCCTTTCCGGCGCCATCGAGCAAAAAAATTGTACACAC 209820 Query 6659 ACCTTGGCCAGTAAAAAGTAAAGCCTCAGATCACATGTTTGTCAACCTCGGCTTCGCCTC 6718 |||| || |||||||| ||||||||||||||||||| || || || Sbjct 209819 ACCTCGGAAAGTAAAAAAGAAAGCCTCAGATCACATGT-----AA-------TT---GTC 209775 Query 6719 GGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTACTGGCCTAGGTATGTAATAT 6778 ||||| | |||| | ||| ||||||||||||||| ||||||| |||||||| Sbjct 209774 GGCCA--------AGGTGAAGT-CGACATTTCTTATTTTACTGCCCTAGGTGTGTAATAT 209724 Query 6779 A 6779 | Sbjct 209723 A 209723 >seq110 Length=1103693 Score = 96.9 bits (106), Expect = 7e-16 Identities = 124/171 (73%), Gaps = 24/171 (14%) Strand=Plus/Plus Query 6007 TATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGCTGGC 6066 ||||||||| ||||||| ||||||||||||||| ||| |||| || | |||| Sbjct 699429 TATATTACACACCTAGGGCAGTAAAATAAGAAATGTC---GACCTCACCT------TGGC 699479 Query 6067 CGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCCAAGG 6126 ||| ||| || ||||||| ||||||||||| |||||||| || ||| Sbjct 699480 CGA--------CAA--TT-----ACATGTGATCTGAGGCTTTCTTTTTTACTTTCCGAGG 699524 Query 6127 TGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTT 6177 ||||| ||| |||||| ||||||| | ||||||| | ||| ||||||| Sbjct 699525 TGTGTGTACAATTTTTTTGCTCGATGGCGCCGGAAAGGATCAATTTTGTTT 699575 Score = 91.5 bits (100), Expect = 3e-14 Identities = 123/171 (72%), Gaps = 24/171 (14%) Strand=Plus/Minus Query 6609 AAACAAAGTTGCCACATTCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGGCCA 6668 ||||||| ||| | ||||||| | ||||||| |||||| ||| |||||||| || | Sbjct 699575 AAACAAAATTGATCCTTTCCGGCGCCATCGAGCAAAAAAATTGTACACACACCTCGGAAA 699516 Query 6669 GTAAAAAGTAAAGCCTCAGATCACATGTTTGTCAACCTCGGCTTCGCCTCGGCCAACAAT 6728 ||||||| ||||||||||||||||||| || || ||||||| Sbjct 699515 GTAAAAAAGAAAGCCTCAGATCACATGT-----AA-------TT---GTCGGCCA----- 699476 Query 6729 TACATGTGATCTGAGACTTTTCTTATTTTACTGGCCTAGGTATGTAATATA 6779 | |||| | ||| ||||||||||||||| ||||||| ||||||||| Sbjct 699475 ---AGGTGAGGT-CGACATTTCTTATTTTACTGCCCTAGGTGTGTAATATA 699429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95463324913968