Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq848 224 2e-54 seq1271 154 2e-33 seq237 154 2e-33 >seq848 Length=180487 Score = 224 bits (248), Expect = 2e-54 Identities = 186/223 (83%), Gaps = 13/223 (6%) Strand=Plus/Minus Query 9899 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAAtttttttC 9958 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 111410 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC---CGAATTTTTTC 111354 Query 9959 TCACATATTCTATACACTCACATTAAGATGATCCTCTCCACAATCCTTTCTCAATCCTTT 10018 || | ||||||||| |||| |||||||| |||||| ||||||||| |||| | Sbjct 111353 TCGCTTATTCTATAAACTCCCATTAAGAAGATCCT-------TTCCTTTCTCTTTCCTAT 111301 Query 10019 CC-TACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAA 10076 || |||| |||||||||||| |||||| ||||||||||||||||| ||| ||||||||| Sbjct 111300 CCTTACCCTTTATCCTGTTACATGAATG-TGGAACGCTTCACGTAAAAATATATCCGTAA 111242 Query 10077 CTCCTATTCTTTTCCGCTTTACAGCATTATTTATATTTGTTAA 10119 || | ||| ||| |||||| |||||||||||| |||||| || Sbjct 111241 CTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGTAAA 111199 Score = 143 bits (158), Expect = 4e-30 Identities = 119/145 (82%), Gaps = 9/145 (6%) Strand=Plus/Minus Query 14336 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCT 14395 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 111410 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 111353 Query 14396 CGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCATAATCCTTTCTCAATCCTTTC 14455 ||| ||||||||| |||| |||||||||| |||| ||||||||| |||| || Sbjct 111352 CGCTTATTCTATAAACTCCCATTAAGAAGATCCT-------TTCCTTTCTCTTTCCTATC 111300 Query 14456 CTACCAAAATATCCTGTTACGTGAA 14480 || | ||||||||||| |||| Sbjct 111299 CTTACCCTTTATCCTGTTACATGAA 111275 Score = 136 bits (150), Expect = 6e-28 Identities = 118/143 (83%), Gaps = 10/143 (7%) Strand=Plus/Minus Query 9660 CATTAAGAAGTTCCTCTCCACAATCCTTTCTCAATCCTTTCCT-ACCAATTATCCTGTTA 9718 |||||||||| |||| ||| |||||| |||| |||| ||| ||||||||||| Sbjct 111333 CATTAAGAAGATCCTTTCC-------TTTCTCTTTCCTATCCTTACCCTTTATCCTGTTA 111281 Query 9719 CGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAACTCCTATTCTTTCCCGCTTC 9777 | ||||||| |||||||||||||||| ||| ||||||||||| | ||| ||||||||||| Sbjct 111280 CATGAATGT-GGAACGCTTCACGTAAAAATATATCCGTAACTTCCATTGTTTCCCGCTTC 111222 Query 9778 ACAGCATTATTTATATTTGTTAA 9800 |||||||||||| |||||| || Sbjct 111221 ACAGCATTATTTTCATTTGTAAA 111199 Score = 98.7 bits (108), Expect = 2e-16 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 14157 TGAATGTTGGAACGCTTCACGTAATAAATTATCCGTAACTCCTATTCTTTCCCGCTTCAC 14216 ||||||| |||||||||||||||| || ||||||||||| | ||| ||||||||||||| Sbjct 111278 TGAATGT-GGAACGCTTCACGTAAAAATATATCCGTAACTTCCATTGTTTCCCGCTTCAC 111220 Query 14217 AGCATTATTTATATTTGTTAA 14237 |||||||||| |||||| || Sbjct 111219 AGCATTATTTTCATTTGTAAA 111199 >seq1271 Length=79403 Score = 154 bits (170), Expect = 2e-33 Identities = 134/162 (83%), Gaps = 11/162 (7%) Strand=Plus/Plus Query 9899 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAAtttttttC 9958 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 76514 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC---CGAATTTTTTC 76570 Query 9959 TCACATATTCTATACACTCACATTAAGATGATCCTCTCCACAATCCTTTCTCAATCCTTT 10018 || | ||||||||| |||| |||||||| | | || | | | ||||||||| |||| Sbjct 76571 TCGCTTATTCTATAAACTCCCATTAAGAAGGTACTTTTCTC--TCCTTTCTCTTTCCTAC 76628 Query 10019 CC-TACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCAC 10059 || |||| ||||||||||||||||| ||||||||||||| Sbjct 76629 CCTTACC----ATCCTGTTACGTGAATG-TGGAACGCTTCAC 76665 Score = 141 bits (156), Expect = 1e-29 Identities = 121/146 (83%), Gaps = 10/146 (7%) Strand=Plus/Plus Query 14336 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATCTAATAATTTTTTCT 14395 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 76514 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 76571 Query 14396 CGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCATAATCCTTTCTCAATCCTTTC 14455 ||| ||||||||| |||| |||||||||| | || | | |||||||| ||||| Sbjct 76572 CGCTTATTCTATAAACTCCCATTAAGAAGGTACTTTTC--TCTCCTTTCT-----CTTTC 76624 Query 14456 CTA-CCAAAATATCCTGTTACGTGAA 14480 ||| || | ||||||||||||||| Sbjct 76625 CTACCCTTACCATCCTGTTACGTGAA 76650 >seq237 Length=703356 Score = 154 bits (170), Expect = 2e-33 Identities = 139/170 (82%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 9952 ttttttCTCACATATTCTATACACTCACATTAAGATGATCCTCTCCACAATCCTTTCTCA 10011 ||||| ||| | |||| |||| |||| |||||||| | |||| ||| | ||||||||| Sbjct 3215 TTTTTGCTCGCTTATTTTATAAACTCTCATTAAGAAGGTCCTTTCCTC--TCCTTTCTCT 3272 Query 10012 ATCCTTTCCT-ACCAATTATCCTGTTACGTGAATGTTGGAACGCTTCACGTAATAAT-TA 10069 |||| |||| ||| ||||||||||| |||||||| ||||| |||||||||| ||| || Sbjct 3273 TTCCTATCCTTACCCTTTATCCTGTTAGGTGAATGT-GGAACCCTTCACGTAAAAATATA 3331 Query 10070 TCCGTAACTCCTATTCTTTTCCGCTTTACAGCATTATTTATATTTGTTAA 10119 ||||||||| | ||| ||| |||||| |||||||||||| |||||| || Sbjct 3332 TCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGTAAA 3381 Score = 145 bits (160), Expect = 1e-30 Identities = 121/143 (85%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 9660 CATTAAGAAGTTCCTCTCCACAATCCTTTCTCAATCCTTTCCT-ACCAATTATCCTGTTA 9718 |||||||||| |||| ||| | ||||||||| |||| |||| ||| ||||||||||| Sbjct 3242 CATTAAGAAGGTCCTTTCCTC--TCCTTTCTCTTTCCTATCCTTACCCTTTATCCTGTTA 3299 Query 9719 CGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAACTCCTATTCTTTCCCGCTTC 9777 |||||||| ||||| |||||||||| ||| ||||||||||| | ||| ||||||||||| Sbjct 3300 GGTGAATGT-GGAACCCTTCACGTAAAAATATATCCGTAACTTCCATTGTTTCCCGCTTC 3358 Query 9778 ACAGCATTATTTATATTTGTTAA 9800 |||||||||||| |||||| || Sbjct 3359 ACAGCATTATTTTCATTTGTAAA 3381 Score = 93.3 bits (102), Expect = 7e-15 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 14157 TGAATGTTGGAACGCTTCACGTAATAAATTATCCGTAACTCCTATTCTTTCCCGCTTCAC 14216 ||||||| ||||| |||||||||| || ||||||||||| | ||| ||||||||||||| Sbjct 3302 TGAATGT-GGAACCCTTCACGTAAAAATATATCCGTAACTTCCATTGTTTCCCGCTTCAC 3360 Query 14217 AGCATTATTTATATTTGTTAA 14237 |||||||||| |||||| || Sbjct 3361 AGCATTATTTTCATTTGTAAA 3381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065623548482