Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq1104 96.9 4e-16 seq95 93.3 4e-15 seq157 86.0 6e-13 seq49 84.2 2e-12 seq286 82.4 8e-12 >seq1104 Length=207343 Score = 96.9 bits (106), Expect = 4e-16 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 46 TAATTTTTAACTTCCCGCTA--AAAATCTGAGATTTT-CAAAAATCGGGAAGTTATTGTT 102 || ||||| ||| |||||| |||| | ||||| ||||||| |||||||||||| | Sbjct 154974 TACTTTTTGTCTTTCCGCTATAAAAACCACTAATTTTTCAAAAATTGGGAAGTTATTGAT 154915 Query 103 CTCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAGAA 162 ||| | ||| |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 154914 TTCAGGCAGATTTTCAAAAATCGAGTATTCATCAGATCTCGACGTTTTGAGATCATAGGA 154855 Query 163 AGCT 166 |||| Sbjct 154854 AGCT 154851 >seq95 Length=1238217 Score = 93.3 bits (102), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 46 TAATTTTTAACTTCCCGCTA--AAAATCTGAGATTTTCAAAAATCGGGAAGTTATTGTTC 103 || ||||| |||| |||||| |||| | ||||| ||||| |||||||||||| | Sbjct 252901 TACTTTTTGACTTTCCGCTACAAAAACCACTAATTTTTCAAAATTGGGAAGTTATTGATT 252960 Query 104 TCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAGAAA 163 ||| || ||| |||||||||| |||||||||||||||||||| || ||| || || Sbjct 252961 TCAAGCCGATTTTTGAAAATCGAGTATTCATCAGATCTCGACGTTTTGAGATCATAGGAA 253020 Query 164 GCT 166 ||| Sbjct 253021 GCT 253023 >seq157 Length=880853 Score = 86.0 bits (94), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 50 TTTTAACTTCCCGC--TAAAAATCTGAGATTTTCAAAAATCGGGAAGTTATTGTTCTCAC 107 |||| |||| |||| |||||| || || || ||||| || | ||||||| | ||| Sbjct 778274 TTTTGACTTTCCGCCATAAAAACCTCTAATATTTCAAAATTGGAATGTTATTGATTTCAG 778215 Query 108 CCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAGAAAGCT 166 || ||| | |||||||||| |||||||||||||||||||| || ||| || ||||| Sbjct 778214 GCCGATTTTCGAAAATCGAGTATTCATCAGATCTCGACGTTTTGAGATCATAGGAAGCT 778156 >seq49 Length=1330490 Score = 84.2 bits (92), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 46 TAATTTTTAACTTCCCGCT--AAAAATCTGAGATTTTCAAAAATCGGGAAGTTATTGTTC 103 || ||||| |||| ||||| ||||| | ||||| ||||| |||||||||||| | Sbjct 1070283 TACTTTTTGACTTTCCGCTGTAAAAACCACTAATTTTTCAAAATTGGGAAGTTATTGATT 1070224 Query 104 TCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAGAAA 163 | | || ||| | ||||||||| |||||||||||||||||||| || ||| | || Sbjct 1070223 TGATACCGATTTTCGAAAATCGAGAATTCATCAGATCTCGACGTTTTGAGATCATGGGAA 1070164 Query 164 GCT 166 ||| Sbjct 1070163 GCT 1070161 >seq286 Length=2588622 Score = 82.4 bits (90), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 46 TAATTTTTAACTTCCCGCTA--AAAATCTGAGATTTTCAAAAATCGGGAAGTTATTGTTC 103 || ||||| |||| |||||| |||| | ||||| ||||| ||||||||||| | Sbjct 2423627 TACTTTTTGACTTTCCGCTACAAAAACCACTAATTTTTCAAAATTTGGAAGTTATTGATG 2423686 Query 104 TCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAG 160 ||| || ||| | |||||| ||| |||||||||||||||||||| || ||| || Sbjct 2423687 TCAGGCCGATTTTCGAAAATCAAGTATTCATCAGATCTCGACGTTTTGAGATCATAG 2423743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50944229619964