Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq848 244 2e-60 seq237 176 9e-40 seq1271 168 1e-37 >seq848 Length=180487 Score = 244 bits (270), Expect = 2e-60 Identities = 190/222 (86%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 9791 TTAACAAATATAAATAATGCTGTGAAGCGGGAAAGAATAGGAGTTACGGATA-ATTATTA 9849 || |||||| ||||||||||||||||||||||| ||| | ||||||||||| ||| ||| Sbjct 111199 TTTACAAATGAAAATAATGCTGTGAAGCGGGAAACAATGGAAGTTACGGATATATTTTTA 111258 Query 9850 CGTGAAGCGTTCCAACATTCACGTAACAGGATAATTGGTA-GGAAAGGATTGAGAAAGGA 9908 |||||||||||||| |||||| |||||||||||| |||| ||| |||| ||||||||| Sbjct 111259 CGTGAAGCGTTCCA-CATTCATGTAACAGGATAAAGGGTAAGGATAGGAAAGAGAAAGGA 111317 Query 9909 TTGTGGAGAGGAACTTCTTAATGTGAGTTTATAGAATATGTGAGAAAAAATTATTAGATA 9968 |||| |||||||||| |||||||||||||| | ||||||||||| |||| Sbjct 111318 A-------AGGATCTTCTTAATGGGAGTTTATAGAATAAGCGAGAAAAAATTCG--GATA 111368 Query 9969 GCTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 10010 |||||||||||||||||||||||||||||||||||||||||| Sbjct 111369 GCTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 111410 Score = 232 bits (256), Expect = 1e-56 Identities = 186/221 (84%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 10109 TTAACAATTATAAATAATGCTGTGAAGCGGGAAAGAATAGGAGTTACGGATAATTTATTA 10168 || |||| | ||||||||||||||||||||||| ||| | ||||||||||| || ||| Sbjct 111199 TTTACAAATGAAAATAATGCTGTGAAGCGGGAAACAATGGAAGTTACGGATATATTTTTA 111258 Query 10169 CGTGAAGCGTTCCAACATTCACGTAACAGGATAATTGCT-AGGAAAGGATTGAGAAAGGA 10227 ||||||||||||| ||||||| |||||||||||| | | |||| |||| |||||| Sbjct 111259 CGTGAAGCGTTCC-ACATTCATGTAACAGGATAAAGGGTAAGGATAGGAAAGAGAAA--- 111314 Query 10228 TTGTGGAGAGGATCATCTTAATGTGAGTGTATAGAATATGCGAGAAAAATTATTAGATAG 10287 ||| |||||| |||||||| |||| ||||||||| |||||||||| | | ||||| Sbjct 111315 ----GGAAAGGATCTTCTTAATGGGAGTTTATAGAATAAGCGAGAAAAAAT-TCGGATAG 111369 Query 10288 CTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 10328 ||||||||||||||||||||||||||||||||||||||||| Sbjct 111370 CTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 111410 Score = 221 bits (244), Expect = 2e-53 Identities = 182/219 (83%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 23470 ACATGTCTTCGGAAGGTTCTGGGTTCGTATCCCAGTCCGAGCTATCTAATAATTTTTTCT 23529 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 111410 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 111353 Query 23530 CGCATATTCTATACACTCACATTAAAAAGTTCCTCTCCACAATCCTTTCTCAATCCTTTC 23589 ||| ||||||||| |||| |||||| ||| |||| ||||||||| |||| || Sbjct 111352 CGCTTATTCTATAAACTCCCATTAAGAAGATCCT-------TTCCTTTCTCTTTCCTATC 111300 Query 23590 CTACCAAAATATCCTGCTACGTGAATGTTGGAACGCTTCACGTAATAAT-TATCCGTAAC 23648 || | ||||||| ||| |||||| ||||||||||||||||| ||| |||||||||| Sbjct 111299 CTTACCCTTTATCCTGTTACATGAATG-TGGAACGCTTCACGTAAAAATATATCCGTAAC 111241 Query 23649 TCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGT 23687 | | ||| ||||||||||||||||||||||| |||||| Sbjct 111240 TTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGT 111202 Score = 159 bits (176), Expect = 7e-35 Identities = 139/171 (81%), Gaps = 9/171 (5%) Strand=Plus/Minus Query 23202 ATTTTTTCTCGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCACAATCCTTTCTC 23261 |||||||||||| ||||||||| |||| |||||||||| |||| ||| |||||| Sbjct 111361 ATTTTTTCTCGCTTATTCTATAAACTCCCATTAAGAAGATCCTTTCC-------TTTCTC 111309 Query 23262 AATCCTTTCCTACCAAAATATCCTGTTACGTGAATATTGGAACGCTTCACGTAATAAT-T 23320 |||| |||| | ||||||||||| ||||| | |||||||||||||||| ||| | Sbjct 111308 TTTCCTATCCTTACCCTTTATCCTGTTACATGAATGT-GGAACGCTTCACGTAAAAATAT 111250 Query 23321 ATCCGTAACTCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGTTAA 23371 |||||||||| | ||| ||||||||||||||||||||||| |||||| || Sbjct 111249 ATCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGTAAA 111199 >seq237 Length=703356 Score = 176 bits (194), Expect = 9e-40 Identities = 145/172 (84%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 9791 TTAACAAATATAAATAATGCTGTGAAGCGGGAAAGAATAGGAGTTACGGATA-ATTATTA 9849 || |||||| ||||||||||||||||||||||| ||| | ||||||||||| ||| ||| Sbjct 3381 TTTACAAATGAAAATAATGCTGTGAAGCGGGAAACAATGGAAGTTACGGATATATTTTTA 3322 Query 9850 CGTGAAGCGTTCCAACATTCACGTAACAGGATAATTGGT-AGGAAAGGATTGAGAAAGGA 9908 ||||||| ||||| |||||||| ||||||||||| ||| |||| |||| ||||||||| Sbjct 3321 CGTGAAGGGTTCC-ACATTCACCTAACAGGATAAAGGGTAAGGATAGGAAAGAGAAAGGA 3263 Query 9909 TTGTGGAGAGGAACTTCTTAATGTGAGTTTATAGAATATGTGAGAAAAAATT 9960 | ||| |||| |||||||||| ||||||||| |||| | ||| ||||||| Sbjct 3262 --GAGGAAAGGACCTTCTTAATGAGAGTTTATAAAATAAGCGAGCAAAAATT 3213 Score = 159 bits (176), Expect = 7e-35 Identities = 140/171 (82%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 23202 ATTTTTTCTCGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCACAATCCTTTCTC 23261 |||||| ||||| |||| |||| |||| |||||||||| |||| ||| | ||||||||| Sbjct 3214 ATTTTTGCTCGCTTATTTTATAAACTCTCATTAAGAAGGTCCTTTCCTC--TCCTTTCTC 3271 Query 23262 AATCCTTTCCTACCAAAATATCCTGTTACGTGAATATTGGAACGCTTCACGTAATAAT-T 23320 |||| |||| | |||||||||| |||||| | ||||| |||||||||| ||| | Sbjct 3272 TTTCCTATCCTTACCCTTTATCCTGTTAGGTGAATGT-GGAACCCTTCACGTAAAAATAT 3330 Query 23321 ATCCGTAACTCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGTTAA 23371 |||||||||| | ||| ||||||||||||||||||||||| |||||| || Sbjct 3331 ATCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGTAAA 3381 Score = 158 bits (174), Expect = 2e-34 Identities = 141/172 (82%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 10109 TTAACAATTATAAATAATGCTGTGAAGCGGGAAAGAATAGGAGTTACGGATAATTTATTA 10168 || |||| | ||||||||||||||||||||||| ||| | ||||||||||| || ||| Sbjct 3381 TTTACAAATGAAAATAATGCTGTGAAGCGGGAAACAATGGAAGTTACGGATATATTTTTA 3322 Query 10169 CGTGAAGCGTTCCAACATTCACGTAACAGGATAATTGCT-AGGAAAGGATTGAGAAAGGA 10227 ||||||| ||||| |||||||| ||||||||||| | | |||| |||| ||||||||| Sbjct 3321 CGTGAAGGGTTCC-ACATTCACCTAACAGGATAAAGGGTAAGGATAGGAAAGAGAAAGGA 3263 Query 10228 TTGTGGAGAGGATCATCTTAATGTGAGTGTATAGAATATGCGAG-AAAAATT 10278 | ||| |||| | |||||||| |||| |||| |||| ||||| ||||||| Sbjct 3262 --GAGGAAAGGACCTTCTTAATGAGAGTTTATAAAATAAGCGAGCAAAAATT 3213 Score = 156 bits (172), Expect = 9e-34 Identities = 138/169 (82%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 23520 AATTTTTTCTCGCATATTCTATACACTCACATTAAAAAGTTCCTCTCCACAATCCTTTCT 23579 ||||||| ||||| |||| |||| |||| |||||| ||| |||| ||| | |||||||| Sbjct 3213 AATTTTTGCTCGCTTATTTTATAAACTCTCATTAAGAAGGTCCTTTCCTC--TCCTTTCT 3270 Query 23580 CAATCCTTTCCTACCAAAATATCCTGCTACGTGAATGTTGGAACGCTTCACGTAATAAT- 23638 | |||| |||| | ||||||| || |||||||| ||||| |||||||||| ||| Sbjct 3271 CTTTCCTATCCTTACCCTTTATCCTGTTAGGTGAATGT-GGAACCCTTCACGTAAAAATA 3329 Query 23639 TATCCGTAACTCCTATTCTTTCCCGCTTCACAGCATTATTTATATTTGT 23687 ||||||||||| | ||| ||||||||||||||||||||||| |||||| Sbjct 3330 TATCCGTAACTTCCATTGTTTCCCGCTTCACAGCATTATTTTCATTTGT 3378 >seq1271 Length=79403 Score = 168 bits (186), Expect = 1e-37 Identities = 137/161 (85%), Gaps = 10/161 (6%) Strand=Plus/Minus Query 9851 GTGAAGCGTTCCAACATTCACGTAACAGGATAATTGGTA-GGAAAGGATTGAGAAAGGAT 9909 ||||||||||||| ||||||||||||||||| |||| || |||| ||||||||| Sbjct 76665 GTGAAGCGTTCCA-CATTCACGTAACAGGAT----GGTAAGGGTAGGAAAGAGAAAGGA- 76612 Query 9910 TGTGGAGAGGAACTTCTTAATGTGAGTTTATAGAATATGTGAGAAAAAATTATTAGATAG 9969 | | | || | |||||||||| |||||||||||||| | ||||||||||| ||||| Sbjct 76611 -GAGAAAAGTACCTTCTTAATGGGAGTTTATAGAATAAGCGAGAAAAAATTCG--GATAG 76555 Query 9970 CTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 10010 ||||||||||||||||||||||||||||||||||||||||| Sbjct 76554 CTCGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 76514 Score = 158 bits (174), Expect = 2e-34 Identities = 133/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 10170 GTGAAGCGTTCCAACATTCACGTAACAGGATAATTGCTAGGAAAGGATTGAGAAAGGATT 10229 ||||||||||||| ||||||||||||||||| | ||| |||| ||||||||| Sbjct 76665 GTGAAGCGTTCCA-CATTCACGTAACAGGATGGTA---AGGGTAGGAAAGAGAAAGGA-- 76612 Query 10230 GTGGAGAGGATCATCTTAATGTGAGTGTATAGAATATGCGAGAAAAATTATTAGATAGCT 10289 | | | || | | |||||||| |||| ||||||||| |||||||||| | | ||||||| Sbjct 76611 GAGAAAAGTACCTTCTTAATGGGAGTTTATAGAATAAGCGAGAAAAAAT-TCGGATAGCT 76553 Query 10290 CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 10328 ||||||||||||||||||||||||||||||||||||||| Sbjct 76552 CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATGT 76514 Score = 154 bits (170), Expect = 3e-33 Identities = 134/162 (83%), Gaps = 11/162 (7%) Strand=Plus/Plus Query 23470 ACATGTCTTCGGAAGGTTCTGGGTTCGTATCCCAGTCCGAGCTATCTAATAATTTTTTCT 23529 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 76514 ACATGTCTTCGGAAGGTTCTGGGTTCGAATCCCAGTCCGAGCTATC--CGAATTTTTTCT 76571 Query 23530 CGCATATTCTATACACTCACATTAAAAAGTTCCTCTCCACAATCCTTTCTCAATCCTTTC 23589 ||| ||||||||| |||| |||||| ||| | || | | | |||||||| ||||| Sbjct 76572 CGCTTATTCTATAAACTCCCATTAAGAAGGTACTTTTCTC--TCCTTTCT-----CTTTC 76624 Query 23590 CTA-CCAAAATATCCTGCTACGTGAATGTTGGAACGCTTCAC 23630 ||| || | |||||| |||||||||| ||||||||||||| Sbjct 76625 CTACCCTTACCATCCTGTTACGTGAATG-TGGAACGCTTCAC 76665 Score = 91.5 bits (100), Expect = 3e-14 Identities = 89/111 (80%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 23202 ATTTTTTCTCGCATATTCTATACACTCACATTAAGAAGTTCCTCTCCACAATCCTTTCTC 23261 |||||||||||| ||||||||| |||| |||||||||| | || | | | |||||||| Sbjct 76563 ATTTTTTCTCGCTTATTCTATAAACTCCCATTAAGAAGGTACTTTTCTC--TCCTTTCT- 76619 Query 23262 AATCCTTTCCTA-CCAAAATATCCTGTTACGTGAATATTGGAACGCTTCAC 23311 |||||||| || | |||||||||||||||| ||||||||||||| Sbjct 76620 ----CTTTCCTACCCTTACCATCCTGTTACGTGAAT-GTGGAACGCTTCAC 76665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102176089884792