Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq349 251 8e-62 seq17 113 5e-20 >seq349 Length=550016 Score = 251 bits (278), Expect = 8e-62 Identities = 558/828 (67%), Gaps = 8/828 (1%) Strand=Plus/Minus Query 36873 ATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTC 36931 ||||| ||| ||| || || || || ||| |||| ||||| || || || || || || Sbjct 192971 ATAACGCCCTCTTTCTGGTACTCGCCGACTT-TCTTCTCGAAGAAGTTAGTTTTGCCATC 192913 Query 36932 TAGTG-ATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 |||| | ||| | ||| ||||| || ||||||| | ||||| || | ||| Sbjct 192912 -AGTGGAAATAATGGTCATGAAATCGAAAGGATTAGTGGAGTTATAAATCTTTTCACAAC 192854 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | ||| | || | ||| || || |||||||| || || | ||||| || | | | Sbjct 192853 CGAGTTCAGTAAGCAACCTGTCGGCGACAAATTCGATATACTGGCACATGAGCTTGCAAT 192794 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || ||||| || |||| || | ||||| |||||| || ||| || |||| Sbjct 192793 TCATTCCAATGAGGCTTACGGGTAAGGCATCGGACAGAAATTCTTGTTCGATAGCAACAG 192734 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 ||||| || |||| || | || | || || | | | ||| |||| Sbjct 192733 CATCTCGAATTATACCTACGACTCGATCCTTAGACGGTTTCTGTACGAGATACGAGAACA 192674 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 || || ||||| || |||||||| |||||||||||| |||||||||||||| || | Sbjct 192673 GTAGGCAAGCAAAGTCGCAATGTAACCCTTCATCTCTAGAGATCAATTCATTAGAGAATG 192614 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || |||||||| |||| |||||| | ||| ||||| || || || ||||| | Sbjct 192613 TTAAGCCAGGCATTAAGCCTCGTTTTTTTAGCCAGAATATAGCCGCGAAGCTGCCAGAGA 192554 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || |||||||| || ||||| || || | | | | ||||| || ||| | | Sbjct 192553 AAAATATACCTTCTACCGCTGCGAAGGCGATGATCCTTTCCCCGAATGTACTACTCT--T 192496 Query 37351 C-AGAA-ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | || ||||| ||| | |||||| ||||| |||||| | || ||||| Sbjct 192495 CGAGTTTATCCAGTTTAAAGCCCAATCAGCCTTCTTACGAACACAAGGCAGGGTCTCAAT 192436 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 || || || || |||| ||||| || | ||| || |||||||| || || | | || Sbjct 192435 AGCATTGAAAAGGAAGTCTTTTTGTTTAGGATCGGTAATATAAGTTTCGATCAACATGCT 192376 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 |||||||| || || ||||| || |||||||| || ||||||||||| || | || || Sbjct 192375 GTACATTTCTGAATGGATATTCTCGATAGCTATTTGGAAACCATAAAAGCAACGTGCCTC 192316 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | || ||||| || | || || | ||| || ||||| ||||| ||||| Sbjct 192315 TGTTACCTGAACTTCTTGGCTGAATCTTTCTACTAGATTCTCATTTACTATTCCATCGGA 192256 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 ||| || || || || ||||| | | ||| ||||| ||||| | || || | | || Sbjct 192255 AGCAGCGAAAAACGCGAGAACGTGTGATATGAAATGCCTTTCGTTATCAGAAAGTCTTAC 192196 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| | || ||||| || |||||||| ||||| || ||||||||| Sbjct 192195 CCAGTGATCCATATCCTTAGATAAATCCACTTCCTCTGTGGTCCAAAA 192148 >seq17 Length=2144227 Score = 113 bits (124), Expect = 5e-20 Identities = 337/500 (67%), Gaps = 29/500 (6%) Strand=Plus/Plus Query 142413 ATGATATGTATATACCA----GGTAAAAGAAAATGGATAAAGATAAAAAGGGATTACTTA 142468 |||| | |||||||| | |||||||| | ||| | ||| | |||| ||| ||| | Sbjct 1931308 ATGAAAAGTATATACGAACCTGGTAAAAGGCACTGGTTGAAGGTGAAAAAGGACTACCTC 1931367 Query 142469 AACGATGGTGCAATGGCAGATTCAGCAGATTTAGTCGTATTGGGTGCATATTATGGTAAA 142528 || ||| || ||||| ||| ||||||||||| |||| || || || | ||||| | | Sbjct 1931368 TTCGGTGGGGCGATGGCGGATACAGCAGATTTAATCGTTTTAGGGGCTTGGTATGGAACA 1931427 Query 142529 GGTAAAAGATATGGAGGGATAATGTCTATATTTCTT-ATGGGTTGTTATGAT--GAAGAT 142585 || || | | ||||| || ||||| | |||||| |||||||| || || ||| | Sbjct 1931428 GGCAAGA---AAGGAGGAATGATGTCCGT-TTTCTTGATGGGTTGCTACAATCCGAACA- 1931482 Query 142586 ACAAATACATGGAAAACTGTTACAAAATGTTCAGGAT--TCA--ATGATGAAACATTAAA 142641 | ||| | || || ||||| ||| || || | ||| | ||| |||| | | Sbjct 1931483 ATAAA-AAATTCTGCACCGTTACCAAA-GTCCACACTGGTCATGACGATAAAACTCTTGA 1931540 Query 142642 GGAATTACA---GTCAATTGATATGATAAAAATCAGTAAAAATAAAGATAAAATACCAAC 142698 | ||||||| | | |||| ||| ||||||||||| | | | ||| | ||| Sbjct 1931541 GAAATTACAAACGGAACTTGACATGGTAAAAATCAGTCAGGACATGTCAAAAGTGCCAGG 1931600 Query 142699 ATGGTTAAATATTAACAGTATAC-ATTAT-CCAGATTTTATTGTTAATAATCCAAAAACA 142756 ||||||||| | || | || || | || |||||| | | || | || |||| | Sbjct 1931601 TTGGTTAAATTGCACCA--AGACGATGGTGCCGGATTTTGTCGCTAGAGACCCTAAAA-A 1931657 Query 142757 TC-ACCTGTTTGGGAAATATCCGGATATGAATTTACAAAATCACCAT-CTCATACAGCAG 142814 || |||||| |||||||| | ||| || || || | | ||| || |||||| || | Sbjct 1931658 TCAACCTGTATGGGAAATCACGGGAGCAGAGTTCAC-ACAGCACGATGTTCATACGGCGG 1931716 Query 142815 ATGGGATATCTATTAGATTTCCTAGATGTAAAAATATAAGAAATGATAAAGATTGGTTAT 142874 |||| || ||||| || ||||| ||| || || || || | |||||||| ||| || Sbjct 1931717 ATGGAATTTCTATCAGGTTTCCAAGAGTTACAAGGATTAGGGACGATAAAGACTGGAAAT 1931776 Query 142875 CTGCAACAAATTTACAGGAA 142894 | || || ||| | || ||| Sbjct 1931777 CGGCCACGAATCTGCAAGAA 1931796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592239250922960