Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq349 264 2e-65 seq233 84.2 3e-11 >seq349 Length=550016 Score = 264 bits (292), Expect = 2e-65 Identities = 573/847 (68%), Gaps = 21/847 (2%) Strand=Plus/Minus Query 17862 CTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921 |||| | ||| || |||||||| ||||||||||| || || || || || || || | Sbjct 192961 CTTTCTGGTACTCGCCGACTTTCTTCTCGAAGAAGTTAGTTTTGCCATCAGTGGAAATAA 192902 Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTC-GTAT 17980 |||| ||||| || |||||||||| |||||| ||||| | ||| ||| Sbjct 192901 TGGTCATGAAATCGAAAGGATTAGTGGAGTTATAAATCTTTTCACAACCGAGTTCAGTA- 192843 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 | || || || || |||||||||| ||| || |||| | | ||||||||| || | Sbjct 192842 AGCAACCTGTCGGCGACAAATTCGATATACTGGCACATGAGCTTGCAATTCATTCCAATG 192783 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 || || | |||| ||||| | |||||||| || || |||||| ||| ||| Sbjct 192782 AGGCTTACGGGTAAGGCATCGGACAGAAATTCTTGTTCGATAGCAACAGCATCTCGAATT 192723 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACAC 18160 || || || | | || | | ||| | || | ||| | | | || || Sbjct 192722 ATACCTACGACTCGATCCTTAGACGGTTTCTG---TACGAGATACGAGAACAGTAGGCAA 192666 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||| || ||||| ||||||||||| || || ||||| ||| || ||||| || Sbjct 192665 GCAAAGTCGCAATGTAACCCTTCATCTCTAGAGATCAATTCATTAGAGAATGTTAAGCCA 192606 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| |||| |||||||||||| ||||| | ||||| || | ||| || |||||| Sbjct 192605 GGCATTAAGCCTCGTTTTTTTAGCCAGAATATAGCCGCGAAGCTGCCAGAGAAAAATATA 192546 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC-AG--T 18337 || || || ||||| || || | ||||| | || |||| || | || || | Sbjct 192545 CCTTCTACCGCTGCGAAGGCGATGATCCTTTCCCCGAA--TGTA-CTACTCTTCGAGTTT 192489 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| ||| ||||| || | | | ||| || | |||| |||||||| Sbjct 192488 ATCCAGTTTAAAGCCCAATCAGCCTTCTTACGAACACAAGGCAGGGTCTCAATAGCATTG 192429 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || | ||||||| ||| | ||| | |||||||| ||||| |||| |||||| Sbjct 192428 AAAAGGAAGTCTTTTTGTTTAGGATCGGTAATATAAGTTTCGATCAACATGCTGTACATT 192369 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 || ||||| || | || |||||||| || |||| |||||| | | ||||| | Sbjct 192368 TCTGAATGGATATTCTCGATAGCTATTTGGAAACCATAAAAGCAACGTGCCTCTGTTACC 192309 Query 18518 TGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 |||| || | ||| ||||||||||| | ||||||||| ||||| || || | || Sbjct 192308 TGAACTTCTTGGCT---GAATCTTTCTACTAGATTCTCATTTACTATTCCATCGGAAGCA 192252 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT--CC 18632 |||||||| || | ||| | | |||||||| |||| ||||| || | | || || Sbjct 192251 GCGAAAAACGCGAGAACGTGTGATATGAAATGCCTTTCGTTATC--AGAAAGTCTTACCC 192194 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | ||| ||||| || |||| ||| ||||| || | |||||||| || | |||||| | Sbjct 192193 AGTGATCCATATCCTTAGATAAATCCACTTCCTCTGTGGTCCAAAATGAAGCTTCGGCTT 192134 Query 18693 GTTTGTA 18699 |||||| Sbjct 192133 CTTTGTA 192127 >seq233 Length=1369072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| | | ||||| | || ||||| ||||| || ||||||||||| || Sbjct 301581 AATGCAAATTATCGTAAAAACCCTCACGGGAAAGACTATCACGGTAGAAGTCGAATCATC 301522 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||| | || || || | || |||||||| || Sbjct 301521 TGATACTATCGAAAATGTGAAAGCTAAAAT-CCAGCTATAG-GGAGATTCCTCCAGATCA 301464 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||| ||| ||||| || || ||||| | || || || || || Sbjct 301463 GCAACACCTGATTTTTGCTGGTAAACAACTTAAAGATGAACGCACATTGTCTGA--CTAC 301406 Query 156002 TATATCC--AAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||| || || | || |||||||| || || |||||||| ||| Sbjct 301405 TACATCCAGAATGACTCTACTCTTCATTTGGTATTGCTTTTAAGAGGAGGT 301355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731776179658400