Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq349 145 2e-29 seq747 143 5e-29 seq233 105 1e-17 seq38 87.8 4e-12 >seq349 Length=550016 Score = 145 bits (160), Expect = 2e-29 Identities = 355/544 (65%), Gaps = 4/544 (1%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| || |||||| || || || ||||| || ||||||||| || ||||| Sbjct 192668 CAAGCAAAGTCGCAATGTAACCCTTCATCTCTAGAGATCAATTCATTAGAGAATGTTAAG 192609 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || |||||||| |||| ||||| ||||| ||||| | || || || | ||| || ||| Sbjct 192608 CCAGGCATTAAGCCTCGTTTTTTTAGCCAGAATATAGCCGCGAAGCTGCCAGAGAAAAAT 192549 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 ||||| || || || || || || || ||| | || || | | | || || | | Sbjct 192548 ATACCTTCTACCGCTGCGAAGGCGATGATCCTTTCCCCGAATGT--ACTACTCTTCGAGT 192491 Query 50004 --ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||| |||| ||||||||| || || || | | |||| | | || ||||| | Sbjct 192490 TTATCCAGTTTAAAGCCCAATCAGCCTTCTTACGAACACAAGGCAGGGTCTCAATAGCAT 192431 Query 50062 TAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACA 50121 | || | | ||||| | || || | |||| Sbjct 192430 TGAAAAGGAAGTCTTTTTGTTTAGGATCGGTAATATAAGTTTCGATCAACATGCTGTACA 192371 Query 50122 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAAT 50181 |||| ||||| | | || ||||||||||| || |||||| | ||| |||| Sbjct 192370 TTTCTGAATGGATATTCTCGATAGCTATTTGGAAACCATAAAAGCAACGTGCCTCTGTTA 192311 Query 50182 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 ||||||||| ||||| ||| |||| ||||||| ||| || ||||| || || | Sbjct 192310 CCTGAACTTCTTGGCTGAATCTTTCTACTAGATTCTCATTTACTATTCCATCGGAAGCAG 192251 Query 50242 CGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 50301 |||| || || | ||||| | || ||||| |||| ||||| | || |||| Sbjct 192250 CGAAAAACGCGAGAACGTGTGATATGAAATGCCTTTCGTTATCAGAAAGTCTTACCCAGT 192191 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 || | ||| || |||||||| ||||| ||| | ||||||||||| ||| ||| || || Sbjct 192190 GATCCATATCCTTAGATAAATCCACTTCCTCTGTGGTCCAAAATGAAGCTTCGGCTTCTT 192131 Query 50362 TATA 50365 | || Sbjct 192130 TGTA 192127 >seq747 Length=644639 Score = 143 bits (158), Expect = 5e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||||||||||||| | ||| ||||| || || | |||| ||| || ||| || || Sbjct 453167 ATAATACCACCTCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAG 453108 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| ||||| ||| |||| || | |||||||||||| ||||| | | || ||||| Sbjct 453107 TCAGACAATGTACGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCT 453048 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || || ||||| ||||| |||||| ||| ||||| |||| ||| || | | Sbjct 453047 GGAGGAATCCCCTCTTTGTCTTGGATTTTAGCTTTCACATTTTCGATAGTATCAGATGGT 452988 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| || || ||||| || || | ||||| | || || |||||| Sbjct 452987 TCGACCTCTAGCGTGATAGTTTTCCCCGTGAGGGTTTTCACGAAAATTTGCATT 452934 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| | || ||| |||| || | |||||| || || ||||| || | Sbjct 462536 GATATTGTAGTCAGAAAGAGTACGTCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAACG 462595 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||||||| || || || ||||| || || |||||| ||| || || ||| | Sbjct 462596 CTGTTGATCAGGAGGAATGCCCTCTTTGTCCTGGATTTTAGCTTTAACGTTTTCTATTGT 462655 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | || || ||||| || || |||||||| || | ||||| | || || || Sbjct 462656 GTCAGAAGGCTCGACCTCTAGCGTGATAGTTTTACCCGTGAGGGTTTTTACGAAAATTTG 462715 Query 192534 CAT 192536 ||| Sbjct 462716 CAT 462718 >seq233 Length=1369072 Score = 105 bits (116), Expect = 1e-17 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 192288 TATACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC 192347 |||| ||| |||| || ||||| ||||| | | | ||||| ||||| | ||||| || Sbjct 301334 TATATTTTAAGGTTTTATGATACCTCCTCTTAAAAGCAATACCAAATGAAGAGTAGAGTC 301393 Query 192348 TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 || ||| | || ||||| ||||| |||||||| | | ||||||||||||||| || Sbjct 301394 ATTCTGGATGTAGTAGTCAGACAATGTGCGTTCATCTTTAAGTTGTTTACCAGCAAAAAT 301453 Query 192408 TAATCTCTGTTGATCAGGTGGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || ||||| || || || ||| || || | || |||||| ||| ||||| Sbjct 301454 CAGGTGTTGCTGATCTGGAGGAATCTCC--CTATAGC-TGGATTTTAGCTTTCACATTTT 301510 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 |||| ||| || ||||| ||||||| || || || || || || | ||||| | | Sbjct 301511 CGATAGTATCAGATGATTCGACTTCTACCGTGATAGTCTTTCCCGTGAGGGTTTTTACGA 301570 Query 192527 ATATCTGCATT 192537 || |||||| Sbjct 301571 TAATTTGCATT 301581 >seq38 Length=2283748 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | ||| || || || || | || || ||| || || || Sbjct 1208509 ATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCC 1208450 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || | || ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 1208449 GACAAGGTACGCCCGTCCTCCAACTGTTTGCCGGCGAAGATCAACCTCTGCTGATCGGGA 1208390 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || || || || | || |||| || Sbjct 1208389 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGGACGGCTCC 1208330 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || ||||||||||| | ||| || | || ||||||||| Sbjct 1208329 ACCTCGAGGGTGATAGTTTTACCAGTCAGTGTCTTCACGAAGATCTGCATT 1208279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984347884629900