Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq349 120 5e-22 seq747 116 7e-21 seq233 87.8 3e-12 >seq349 Length=550016 Score = 120 bits (132), Expect = 5e-22 Identities = 526/842 (62%), Gaps = 13/842 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||| ||||| || ||||| || ||||| ||||| ||||| || || || || | Sbjct 192960 TTTCTGGTACTCGCCGACTTTCTTCTCGAAGAAGTTAGTTTTGCCATCAGTGGAAATAAT 192901 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA 38950 |||| ||||| || ||||| ||| |||||| ||||| | | | || | Sbjct 192900 GGTCATGAAATCGAAAGGATTAGTGGAGTTATAAATCTTTTCACAACCGAGTTCAGTAAG 192841 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 || || ||||| |||||||| | ||| || |||| | | |||||||| || | | Sbjct 192840 CAACCTGTCGGCGACAAATTCGATATACTGGCACATGAGCTTGCAATTCATTCCAATGAG 192781 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | ||||| ||||| | |||||||| ||| || | ||||| | | |||||| Sbjct 192780 GCTTACGGGTAAGGCATCGGACAGAAATTCTTGTTCGATAGCAACAGCATCTCGAATTAT 192721 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | | || || || ||| | | | ||| || | |||| || || Sbjct 192720 ACCTACGACTCGATCCTTAGACGGTTTCTGTACGA---GATACGAGAACAGTAGGCAAGC 192664 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 ||| || |||||| ||||| || ||||| || ||||||||| || ||||| || || Sbjct 192663 AAAGTCGCAATGTAACCCTTCATCTCTAGAGATCAATTCATTAGAGAATGTTAAGCCAGG 192604 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 |||||| |||| ||||| ||||| ||||| | || || || | ||| || |||||||| Sbjct 192603 CATTAAGCCTCGTTTTTTTAGCCAGAATATAGCCGCGAAGCTGCCAGAGAAAAATATACC 192544 Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA--ATC 39308 || || || || || || || ||| | || || | | | || || | ||| Sbjct 192543 TTCTACCGCTGCGAAGGCGATGATCCTTTCCCCGAATGT--ACTACTCTTCGAGTTTATC 192486 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || |||| |||||||| || || || | | |||| | | || ||||| || || Sbjct 192485 CAGTTTAAAGCCCAATCAGCCTTCTTACGAACACAAGGCAGGGTCTCAATAGCATTGAAA 192426 Query 39369 A---ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 | | || | |||||| Sbjct 192425 AGGAAGTCTTTTTGTTTAGGATCGGTAATATAAGTTTCGATCAACATGCTG---TACATT 192369 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 || ||||| | | || ||||||||||| || |||||| | ||| |||| | Sbjct 192368 TCTGAATGGATATTCTCGATAGCTATTTGGAAACCATAAAAGCAACGTGCCTCTGTTACC 192309 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 |||||||| ||||| ||| |||| ||||||| ||| || ||||| || || ||| Sbjct 192308 TGAACTTCTTGGCTGAATCTTTCTACTAGATTCTCATTTACTATTCCATCGGAAGCAGCG 192249 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 39605 || || || | ||| | | || ||||| |||| ||||| | || |||| Sbjct 192248 AAAAACGCGAGAACGTGTGATATGAAATGCCTTTCGTTATCAGAAAGTCTTACCCAGTGA 192189 Query 39606 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTA 39665 || | ||| || |||||||| ||||| ||| | |||||||| || ||| ||| || ||| Sbjct 192188 TCCATATCCTTAGATAAATCCACTTCCTCTGTGGTCCAAAATGAAGCTTCGGCTTCTTTG 192129 Query 39666 TA 39667 || Sbjct 192128 TA 192127 >seq747 Length=644639 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || ||||| || || | |||| ||| || || || || Sbjct 453167 ATAATACCACCTCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAG 453108 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | ||| | || || | |||||||||||| || || | | || || || Sbjct 453107 TCAGACAATGTACGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCT 453048 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| ||||| |||||| ||| ||||| |||||||| || | | Sbjct 453047 GGAGGAATCCCCTCTTTGTCTTGGATTTTAGCTTTCACATTTTCGATAGTATCAGATGGT 452988 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| || || ||||| || || | ||||| | ||| || |||||| Sbjct 452987 TCGACCTCTAGCGTGATAGTTTTCCCCGTGAGGGTTTTCACGAAAATTTGCATT 452934 >seq233 Length=1369072 Score = 87.8 bits (96), Expect = 3e-12 Identities = 172/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 171821 TATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC 171880 |||| ||| |||| || ||||| ||||| | | ||||| ||||| | ||||| || Sbjct 301334 TATATTTTAAGGTTTTATGATACCTCCTCTTAAAAGCAATACCAAATGAAGAGTAGAGTC 301393 Query 171881 TTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAAT 171940 || || | || || || || | ||||| || | | |||||||||||||||||| Sbjct 301394 ATTCTGGATGTAGTAGTCAGACAATGTGCGTTCATCTTTAAGTTGTTTACCAGCAAAAAT 301453 Query 171941 TAATCTCTGTTGGTCAGGTGGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 171999 | || || || || || || ||| || || | || |||||| ||| ||||| Sbjct 301454 CAGGTGTTGCTGATCTGGAGGAATCTCC--CTATAGC-TGGATTTTAGCTTTCACATTTT 301510 Query 172000 TTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGA 172059 |||||||| || ||||| ||||||| || || || || || || | ||||| | || Sbjct 301511 CGATAGTATCAGATGATTCGACTTCTACCGTGATAGTCTTTCCCGTGAGGGTTTTTACGA 301570 Query 172060 ATATCTGCATT 172070 || |||||| Sbjct 301571 TAATTTGCATT 301581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905017495069200