Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq38 183 6e-41 seq747 149 1e-30 seq365 145 1e-29 seq233 114 3e-20 seq17 93.3 8e-14 >seq38 Length=2283748 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || ||||||||||| |||||||| || | Sbjct 1208964 TACCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCTTTCTGAATATTATAGTCGG 1208905 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| |||||||| ||||| || ||||| || |||| ||| || ||||| | Sbjct 1208904 AGAGAGTGCGACCATCTTCTAGCTGTTTGCCGGCAAAAATAAGTCGTTGCTGGTCTGGGG 1208845 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||| || || || || |||||||| ||||| ||||| | Sbjct 1208844 GAATCCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTTTCAATAGTATCGGACGGTTCGA 1208785 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| || |||||||| |||||||| Sbjct 1208784 CCTCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTTACAAAGATCTGCAT 1208736 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| ||||| ||||||||||| ||||| |||||||| || | Sbjct 1208736 TACCACCACGTAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATATTATAGTCGG 1208677 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || |||||||| || || || || || || || | ||| ||||| |||| Sbjct 1208676 AAAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGATCCGGAG 1208617 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || || || ||||| || || || ||| ||||| | Sbjct 1208616 GAATCCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGATGGTTCGA 1208557 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| || || || || |||||||| Sbjct 1208556 CTTCCAAAGTGATGGTTTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 1208508 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| || || || || || ||||| || ||||| || || || | | |||| Sbjct 1209634 CGAAGCACTAGATGGAGCGTCGACTCCTTCTGAATGTTATAGTCGGAAAGGGTACGACCG 1209575 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| | || || |||||||| || || || ||||| Sbjct 1209574 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCCTTG 1209515 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| |||||||| || || ||| ||||| ||||||||||| || Sbjct 1209514 TCTTGGATTTTCGCTTTCACATTTTCGATGGTGTCAGATGGTTCGACTTCCAAAGTGATG 1209455 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || || || || |||||||| Sbjct 1209454 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 1209420 >seq747 Length=644639 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||||||||| || ||||| || ||||| || ||||| || || || |||| Sbjct 453163 TACCACCTCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 453104 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| |||||||| ||||| ||||| || | ||| |||||||||| Sbjct 453103 ACAATGTACGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCTGGAG 453044 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| || || ||||| |||||||| || |||||| ||||| | Sbjct 453043 GAATCCCCTCTTTGTCTTGGATTTTAGCTTTCACATTTTCGATAGTATCAGATGGTTCGA 452984 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || || || || || | || || || || || |||||| Sbjct 452983 CCTCTAGCGTGATAGTTTTCCCCGTGAGGGTTTTCACGAAAATTTGCATT 452934 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || ||||| || | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 465968 CCGCCCCTCAACCGTAAAACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAGTCAGAA 466027 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || |||||||||||||| || || ||||| | | |||||||| ||||| Sbjct 466028 GGAGTGCGCCCATCTTCTAGTTGTTTACCCGCGAAGATCAAACGCTGTTGATCGGGAGGA 466087 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || || || ||||| || ||||| || | ||| ||| || || Sbjct 466088 ATACCTTCTTTGTCCTGGATTTTAGCTTTAACGTTTTCTATTGGGTCAGAAGGCTCGACC 466147 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || || ||||| || || | || ||||| || || ||||| || Sbjct 466148 TCTAGCGTGATGGTCTTACCCGTTAGGGTTTTTACGAAAATTTGCATAAT 466197 >seq365 Length=450407 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || ||||| || |||| | | || ||||||| ||| Sbjct 426477 TGAAGCGTTGATTCCTTCTGAATGTTATAGTCGGATAAGGTACGTCCATCTTCTAACTGT 426418 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || ||||| | ||| ||||| || || || ||||| || ||||| |||||| Sbjct 426417 TTCCCAGCGAAAATTAGACGTTGCTGATCAGGGGGGATACCTTCTTTGTCTTGGATCTTT 426358 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || || ||||| ||||| || || | || || ||||| |||||| Sbjct 426357 GCTTTGACATTCTCGATGGTATCTGACGGTTCAACCTCAAGGGTGATGGTCTTACCTGTC 426298 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || |||||||| |||||||| Sbjct 426297 AAAGTTTTTACAAAAATCTGCAT 426275 >seq233 Length=1369072 Score = 114 bits (126), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| ||| ||| || || || |||||||| || ||||| || | || |||| Sbjct 301354 TACCTCCTCTTAAAAGCAATACCAAATGAAGAGTAGAGTCATTCTGGATGTAGTAGTCAG 301413 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||| |||||||| |||||||| || || ||| |||||||||| Sbjct 301414 ACAATGTGCGTTCATCTTTAAGTTGTTTACCAGCAAAAATCAGGTGTTGCTGATCTGGAG 301473 Query 82702 GTATTCCTTCCT-TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||| || | || || || ||||| |||||||| || |||||| | ||| Sbjct 301474 GAAT--CTCCCTATAGC-TGGATTTTAGCTTTCACATTTTCGATAGTATCAGATGATTCG 301530 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| | || || ||||| || || | || ||||| | || |||||| Sbjct 301531 ACTTCTACCGTGATAGTCTTTCCCGTGAGGGTTTTTACGATAATTTGCATT 301581 >seq17 Length=2144227 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 53856 ACTTTG-TAACCGTGCACCATTTTTTAGATTTTGTATCGTAGCAGCCCAT-AAGAAAACT 53913 |||||| |||| ||||| |||||||| || | || |||||| ||||| |||||||| Sbjct 1931510 ACTTTGGTAACGGTGCAGAATTTTTTATTGTTCGGATTGTAGCAACCCATCAAGAAAAC- 1931452 Query 53914 GGATAGAATACCAGATTTATTACCTTTTCCGTAATAAGCACCCAGAACTACTAGATCAGC 53973 ||| | || || ||| || ||| |||| || |||| || | ||| | || ||| || Sbjct 1931451 GGACATCATTCCTCCTTTCTTGCCTGTTCCATACCAAGCCCCTAAAACGATTAAATCTGC 1931392 Query 53974 TTTATCTGCCATAATACAACCATCTAAGTAGTCtttttttATTTTCAACCATCTACGCAT 54033 | |||| ||||| | ||| | |||||| ||||| | |||||||| | | Sbjct 1931391 TGTATCCGCCATCGCCCCACCGAAGAGGTAGTCCTTTTTCACCTTCAACCAGTGCCTTTT 1931332 Query 54034 ACCAGGTTCGTATACACCTTTTGCATCTTTGAGTACAAACCCTTCTA 54080 |||||||||||||| || ||| ||||| | || | ||||||| Sbjct 1931331 ACCAGGTTCGTATATACTTTTCATGTCTTTCAACACCAGACCTTCTA 1931285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981695440630686