Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq349 201 9e-47 seq339 183 2e-41 seq44 107 2e-18 >seq349 Length=550016 Score = 201 bits (222), Expect = 9e-47 Identities = 405/591 (69%), Gaps = 15/591 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGG--CAAATGTACAAAAAAGCACAGG 43757 ||||| | || || || || || | || || ||| ||||| ||||| |||| | | Sbjct 192085 TTTGTTATATTCCCCATCCAGTACCCCGATATTTGGGCCAAAT--ACAAAGAAGCCGAAG 192142 Query 43758 CGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA- 43816 | ||||||||||| |||| ||||| ||||| |||| || | | || ||| | | Sbjct 192143 CTTCATTTTGGACCACAGAGGAAGTGGATTTATCTAAGGATATGGATCACTGGGTAAGAC 192202 Query 43817 -TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 || | || |||| ||||| ||||| ||| | |||||||| ||||| ||| Sbjct 192203 TTTCTGATAAC--GAAAGGCATTTCATATCACACGTTCTCGCGTTTTTCGCTGCTTCCGA 192260 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC-AAGAAGTTCAATTACCAGAAG 43934 || ||||| ||||| ||| | || || | || || |||||||||| || |||| | Sbjct 192261 TGGAATAGTAAATGAGAATCTAGT-AGAAAGATTCAGCCAAGAAGTTCAGGTAACAGAGG 192319 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||| || |||||||| || ||||| || || || ||||| ||||| ||||||||||| Sbjct 192320 CACGTTGCTTTTATGGTTTCCAAATAGCTATCGAGAATATCCATTCAGAAATGTACAGCA 192379 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCA-CGAGAAGCATCGATTGTTTAATGCGATA 44053 | |||| || || || || | ||| | | | ||| | || || ||||| || Sbjct 192380 TGTTGATCGAAACTTATATTACCGATCCTAAACAAAAAGACTTCCTT-TTCAATGCTATT 192438 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA- 44112 || || | ||| || | || || || ||||| | || |||||||| || || Sbjct 192439 GAGACCCTGCCTTGTGTTCGTAAGAAGGCTGATTGGGCTTTAAACTGGATAAACTCGAAG 192498 Query 44113 --TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | | || || ||| | | |||| || |||| || ||||| || || || || Sbjct 192499 AGTAGTACATTCGGGGAAAGGATCATCGCCTTCGCAGCGGTAGAAGGTATATTTTTCTCT 192558 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || ||||| ||||| ||| |||| |||||||| || |||||||| || || || Sbjct 192559 GGCAGCTTCGCGGCTATATTCTGGCTAAAAAAACGAGGCTTAATGCCTGGCTTAACATTC 192618 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||| || || | | |||||||| ||||||||||| ||||||||| Sbjct 192619 TCTAATGAATTGATCTCTAGAGATGAAGGGTTACATTGCGACTTTGCTTGC 192669 >seq339 Length=1584805 Score = 183 bits (202), Expect = 2e-41 Identities = 351/514 (68%), Gaps = 4/514 (1%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| | || |||||||||| | |||||| ||| | | |||||| | | ||| Sbjct 1111949 TTTCCTCTTCTCACTACAAAAAGGGTATTTTGGCGAGGTGTGGTTGAAGAATTACTTTGG 1111890 Query 40752 TTTATCAAAGGTTGTACTAATGC-TAAGAAATTA-TCAGAAAGAGGAGTGCACATTTGGA 40809 |||||| ||| || ||||| | ||| | | ||||||| | | | ||||| ||| Sbjct 1111889 TTTATCCGAGGAAACACCAATGCCTTTGAACTAAGTCAGAAAAATG--TTCACATATGGG 1111832 Query 40810 ATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTG 40869 | || ||||| | | | || || | | || | | |||||||| || |||| Sbjct 1111831 ACGCTAACAGTACCAGACAATTCTTAGATTCGGTGGGTCTTAAGGATAGGGAGGAGGGTG 1111772 Query 40870 ATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT 40929 || | || ||| ||||||| || |||| | | |||||||| || ||||| | |||| Sbjct 1111771 ATTTAGGGCCTATTTATGGTTTCCAGTGGAGGCATTTTGGTGCTGAATATAAAGATATGC 1111712 Query 40930 ACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAAT 40989 | ||||||| | |||||||| || ||||| || |||||| |||| |||||| Sbjct 1111711 ATACTGATTACAAAAATAAAGGTATCGATCAGTTGGCTCATGTTATAAATACAATTAAAA 1111652 Query 40990 CCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGA 41049 | || || | ||||||||||| |||| || ||||| || || | | | | Sbjct 1111651 CAAGACCAAATGACAGACGTATAATAATGTGTGCTTGGAATCCTGTCGATATCCCTGAAA 1111592 Query 41050 TGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCAT 41109 |||| || || || || |||| | ||||| || || || | ||| ||||| | Sbjct 1111591 TGGCTTTACCTCCATGCCATTGCCTCGTACAGTTCTATGTCGCAAACGATGAGCTGTCTT 1111532 Query 41110 GTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTT 41169 |||| || ||||||||||| | |||||||| |||| || |||||||| || || || | Sbjct 1111531 GTCAGTTATATCAAAGATCGGCCGACATGGGTTTAGGAGTACCGTTTAATATTGCAAGCT 1111472 Query 41170 ATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||| ||||| || |||||||| ||||| ||||| Sbjct 1111471 ATGCGCTGCTTACTTATATGATAGCACATGTTAC 1111438 >seq44 Length=1871461 Score = 107 bits (118), Expect = 2e-18 Identities = 200/290 (69%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || ||||| || || || || || || | | ||||||| || | || Sbjct 641878 AATTGGTGGTTTGAGCAATGAATTCAATGCCATATTCAGACGCGCATTTGCATCAAGAGT 641819 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| || |||| | | ||||||||||||| ||||||||| || |||| || || Sbjct 641818 ATTTCCTCCAGAAATTGTGGAACAATTGGGATGCAAACATGTTAAAGGTATTTTACTATA 641759 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTAC 19418 ||| ||||| || |||||||| | || || || | || ||||| ||| | | Sbjct 641758 TGGACCACCTGGAACAGGAAAAACCCTGATGGCAAGGCAGATTGGTAAAATGTTAAATGC 641699 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | |||| ||||||||| || || || |||| || | || ||||| ||| |||| Sbjct 641698 TAGAGAACC---CAAAATTGTCAACGGCCCACAAATTTTGGACAAGTATGTTGGTGAATC 641642 Query 19479 GGAAGAAAATGT-ACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 |||| ||||| | || | || |||||||| || |||||||| ||||| Sbjct 641641 AGAAGCGAATGTGAGGAGGCTT-TTTGCTGAAGCCGAAGAAGAGGAAAAA 641593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397405263996370