Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplophora_20glabripennis_20[refseq_20GCF_5F000390285.1_202013-05- 14] 10,474 sequences; 707,727,967 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq747 95.1 9e-15 seq38 91.5 1e-13 >seq747 Length=644639 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || || |||||| ||| || | || |||||| | Sbjct 452934 AATGCAAATTTTCGTGAAAACCCTCACGGGGAAAACTATCACGCTAGAGGTCGAACCATC 452993 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| |||||||| || |||| || Sbjct 452994 TGATACTATCGAAAAT--GTGAAAGCTAAAATCCAAGACAAAGAGGGGATTCCTCCAGAT 453051 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || || || || |||||| | || || | ||| | ||||| || ||| Sbjct 453052 CAGCAACGTCTGATCTTCGCTGGTAAACAACTTGAAGATGGACGTACATTGTCTGACTAC 453111 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | || ||||| ||||||||| | || || Sbjct 453112 AACATCCAGAAGGAGTCTACCCTTCACTTGGTATTGCGTTTGAGAGGTGG 453161 >seq38 Length=2283748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || |||||||| | ||||||||||| || || | || Sbjct 1209285 GACAAAGAAGGGATTCCCCCAGATCAGCAACGTCTTATTTTTGCCGGCAAGCAGCTAGAA 1209344 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | | ||||| ||||| ||||||||||| ||| | || |||||| || Sbjct 1209345 GATGGACGCACCCTTTCCGACTACAATATCCAAAAAGAATCCACCCTTCACTTGGTTCTG 1209404 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 1209405 CGTCTCCGTGGTGGC 1209419 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || | || || ||||| |||| || || ||||| ||||| ||||| Sbjct 1208373 GACAAAGAGGGCATCCCTCCCGATCAGCAGAGGTTGATCTTCGCCGGCAAACAGTTGGAG 1208432 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | |||||| || ||||||||||| || || ||| ||||| ||||| | Sbjct 1208433 GACGGGCGTACCTTGTCGGACTACAACATCCAGAAGGAATCCACCTTGCACTTGGTACTC 1208492 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 1208493 CGTCTCCGTGGTGGC 1208507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355816973497398