Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq613 104 2e-17 >seq613 Length=358256 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| | ||| ||||||||||| || | || || ||||| | ||| Sbjct 260012 ATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 260071 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| || || || ||||| | |||||||||||| ||||||||| | || Sbjct 260072 AAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 260131 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 |||||||| ||||| || ||| || |||||||| || || | || || |||| | Sbjct 260132 TTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 260191 Query 16652 TTTTC 16656 ||||| Sbjct 260192 TTTTC 260196 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16027 AACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT 16086 || |||||||||||| |||||||| |||||||||||||| | | || || || ||||| Sbjct 259400 AAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTAT 259459 Query 16087 AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAAT 16146 | | || || | || | ||||||||||| |||||| || || || || ||||| Sbjct 259460 CATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTGACAGCATCCTTAAT 259519 Query 16147 GATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || ||| ||||| ||| ||| | || | |||||| ||||||| ||| || Sbjct 259520 AATTGATGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGC 259579 Query 16207 GAAGTCGCAATGTAGTCC 16224 || || ||||||| ||| Sbjct 259580 AAAATCACAATGTAATCC 259597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398859394920