Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 >seq3 Length=676877 Score = 143 bits (158), Expect = 2e-29 Identities = 195/265 (74%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||||||| |||||||| | | |||||||| ||| || ||||| ||||| ||| Sbjct 624592 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 624651 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC-ATAAAAAC-CAAGTTTATCTA 102122 |||||||| | ||| || | ||||||||| || || || |||||| | |||| ||||| Sbjct 624652 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTATAAAACCACAAG--AATCTA 624709 Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCT--GCTGATAGCTCTTT 102180 |||| | || | ||||||||||||||| || || | | ||| | | ||||| Sbjct 624710 AAAACTCACGCGAACTATTCGCATCCCAAATATGAACATCCTTTTCGCTTA-ATTTCTTT 624768 Query 102181 GCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC 102240 || | || |||||| | |||||||| |||| ||| || || |||||| |||||||||| Sbjct 624769 GC-ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATAC 624827 Query 102241 TCTCTTAGTAGTTAAAAGTGGAAAT 102265 | || |||||||| | ||||||| Sbjct 624828 ACGTTTTGTAGTTAATAATGGAAAT 624852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 || |||| | |||||| ||||| |||||||| || || | |||||||| || || Sbjct 624277 AAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCACTTC 624336 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891 ||||||| ||||| || || | | | ||| | |||||||||||| || ||||| Sbjct 624337 TTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACGAAACAATGAC 624396 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| || || ||||||| ||||| || |||||| || ||||| || |||| Sbjct 624397 AAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATTCTTC 624456 Query 101952 TATC 101955 |||| Sbjct 624457 TATC 624460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361240496917181