Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12]
2,431 sequences; 228,331,812 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 2e-29
>seq3
Length=676877
Score = 143 bits (158), Expect = 2e-29
Identities = 195/265 (74%), Gaps = 8/265 (3%)
Strand=Plus/Plus
Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064
|||||||| |||||||| | | |||||||| ||| || ||||| ||||| |||
Sbjct 624592 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 624651
Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC-ATAAAAAC-CAAGTTTATCTA 102122
|||||||| | ||| || | ||||||||| || || || |||||| | |||| |||||
Sbjct 624652 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTATAAAACCACAAG--AATCTA 624709
Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCT--GCTGATAGCTCTTT 102180
|||| | || | ||||||||||||||| || || | | ||| | | |||||
Sbjct 624710 AAAACTCACGCGAACTATTCGCATCCCAAATATGAACATCCTTTTCGCTTA-ATTTCTTT 624768
Query 102181 GCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC 102240
|| | || |||||| | |||||||| |||| ||| || || |||||| ||||||||||
Sbjct 624769 GC-ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATAC 624827
Query 102241 TCTCTTAGTAGTTAAAAGTGGAAAT 102265
| || |||||||| | |||||||
Sbjct 624828 ACGTTTTGTAGTTAATAATGGAAAT 624852
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831
|| |||| | |||||| ||||| |||||||| || || | |||||||| || ||
Sbjct 624277 AAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCACTTC 624336
Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891
||||||| ||||| || || | | | ||| | |||||||||||| || |||||
Sbjct 624337 TTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACGAAACAATGAC 624396
Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951
|||| || || ||||||| ||||| || |||||| || ||||| || ||||
Sbjct 624397 AAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATTCTTC 624456
Query 101952 TATC 101955
||||
Sbjct 624457 TATC 624460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361240496917181
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |