Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1766 123 2e-23 seq2209 107 2e-18 seq2420 84.2 2e-11 >seq1766 Length=1490156 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || |||||||| | || || ||||| ||||| ||| ||| | | Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || |||||| |||||||||||| | || ||||| Sbjct 1263101 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 1263160 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||| | |||||||| || ||||| ||||||||| | ||| | |||||||||| Sbjct 1263161 ACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 1263220 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| |||||||| ||||| | || |||||| | || || || Sbjct 1263221 TATTCAAAAAGAATCTACACTTCATCTTGTTTTACGACTTCGTGGTGG 1263268 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || ||||| ||||| ||| ||| | | Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||||| || ||||||||| | || |||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || ||| | |||||||| || ||||||||||||||| | | ||| | ||||||||| Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CCGATTACA 1264359 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||| ||||| ||||||||| | || | || | ||||| || Sbjct 1264360 ATATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGG 1264408 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | ||||| ||||| ||||| ||| ||| | | Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||||| || ||||||||| | || |||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || ||||| | |||||| ||| | ||||||||||| Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || || || | || |||| | ||||| || Sbjct 1263450 ATTCAAAAAGAATCAACCCTCCATCTTGTTCTACGTCTTCGAGGTGG 1263496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| ||||||| | || || || || ||||| ||| ||| | | Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || |||||| || ||||||||| | || || || Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1264072 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||| | |||||||| || |||||||| |||||| ||| | |||||||||| Sbjct 1264073 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAA 1264132 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| || || || | || || ||| | || || || Sbjct 1264133 TATTCAAAAAGAATCAACCCTCCATCTTGTTTTGCGACTTCGTGGTGG 1264180 >seq2209 Length=4115427 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || ||||| ||||||||| ||| ||| | || Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || || ||| ||||||||||| | || ||||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 648307 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || |||||| | |||||| | |||| | | ||||| ||| Sbjct 648306 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAT 648247 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||| |||||| | ||||| || | ||||| || Sbjct 648246 ATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGG 648200 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||| | || || |||||||| || ||| ||| | | Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| || ||| ||||||||||| | || ||||| Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCA 664185 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || | |||||||| || |||||| | |||||| | ||| | | |||||||| Sbjct 664184 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 664125 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| |||||||||||||| |||| || || | ||||| || Sbjct 664124 TATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGG 664077 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||| | || || |||||||| || ||| ||| | | Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| || ||| ||||||||||| | || |||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| || | || ||||| ||||||||| | |||||| | ||| | | ||||| || Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||||||||| || || | ||||| || | ||||||| Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || ||||| ||||||||| ||| ||| | || Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || || ||| ||||||||||| | || ||||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 663728 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | |||||||| ||||||||| | |||||| | ||| | | ||||| ||| Sbjct 663727 CAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAAT 663668 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || || ||||||||||| | || || || | |||||||| Sbjct 663667 ATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGG 663621 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 648887 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 648828 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | |||| || | | || | || || ||| |||||||| || | || || Sbjct 648827 CTTCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAG 648768 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || ||||| ||||||||| | |||||| | ||| | | |||| Sbjct 648767 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 648708 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | |||||||| || || ||||||||||| | || || || | |||||||| Sbjct 648707 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGG 648656 >seq2420 Length=677074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||||||| | |||||||| || ||||||||||||||| | || | | ||||| Sbjct 459117 TCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAGGACACTTTCAGATTA 459176 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| | || ||||| |||| ||| | || || Sbjct 459177 TAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAGGGGTGG 459227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784628989434