Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 >seq3 Length=676877 Score = 138 bits (152), Expect = 8e-28 Identities = 190/262 (73%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 97369 CCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGG 97428 ||||||||| ||||| | | | | ||| |||| ||| |||||||| |||||||| Sbjct 624592 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 624651 Query 97429 AATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAA 97488 |||||||||| ||| || | ||||||||||| ||||| |||||| ||||||| Sbjct 624652 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTATAAAACCACAAGAATCTAAA 624711 Query 97489 TAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT--GCTGCAAGCTCTTTGC 97546 | | || | ||| ||||||||||| || ||| | | ||| || ||||||| Sbjct 624712 AACTCACGCGAACTATTCGCATCCCAAATATGAACATCCTTTTCGCT-TAATTTCTTTGC 624770 Query 97547 TGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTC 97606 | || |||||| | |||||||| |||||||| ||||| |||||| |||||||||| | Sbjct 624771 -ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATACAC 624829 Query 97607 TCTTAGTTGTTAAGAGAGGAAA 97628 || || ||||| | ||||| Sbjct 624830 GTTTTGTAGTTAATAATGGAAA 624851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 ||| || |||| | |||||| ||||| ||||| || || || || |||||||| || Sbjct 624273 ATATAAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCA 624332 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251 ||||||||| | || || || | | | ||| | |||||||| ||| || | Sbjct 624333 CTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACGAAACAA 624392 Query 97252 TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATT 97311 ||||| || || || ||||||||||||| ||| | |||||| || ||| | ||| Sbjct 624393 TGACAAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATT 624452 Query 97312 CTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTATCTGCTTTAATTGATCAANNCC 97370 |||||||| ||||| | | |||| ||| || | | ||||||||||||| || Sbjct 624453 CTTCTATC-ATTGGGAGAATATCGTATTTTATCTATAACTTCTTTTAATTGATCAATACC 624511 Query 97371 T 97371 | Sbjct 624512 T 624512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773725548670