Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2209 109 5e-19 seq1766 109 5e-19 >seq2209 Length=4115427 Score = 109 bits (120), Expect = 5e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| |||||||| | |||||| ||||| ||||| |||||||| | Sbjct 663393 CCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATC--TA 663450 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| | || | || |||||||| |||| Sbjct 663451 AGAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAG 663510 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || || || | ||| | || |||| ||| || Sbjct 663511 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCT-TCA 663569 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || || || |||||||| |||||||| ||||| Sbjct 663570 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 663619 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| || | || | ||||||||||| ||||| || |||| || Sbjct 663621 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAAT--CTG 663678 Query 118572 ATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | ||| || || ||||| ||||| |||| | || |||||||| |||| Sbjct 663679 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAG 663738 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || |||||| | || | || || | ||| || Sbjct 663739 GAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCT-TCA 663797 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | || ||||| || |||||||| |||||||| ||||| Sbjct 663798 ACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | |||||| |||| || | ||||| ||||||||||| |||||||| | Sbjct 664077 CCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATC--TG 664134 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| |||| | || ||||||||||||| Sbjct 664135 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAG 664194 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || || || | || | || || | ||| || Sbjct 664195 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCT-TCA 664253 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 664254 ACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| || | || | ||||||||||| ||||| || |||| || Sbjct 648656 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAAT--CTG 648713 Query 118572 ATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | ||| || || ||||| ||||| | || | ||| || ||||| || | Sbjct 648714 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 648773 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| || ||| ||| || ||| || | || | ||||| | ||| || Sbjct 648774 GAATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCT-TCA 648832 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || | ||| || ||||| |||||||| Sbjct 648833 ACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 648882 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 || || | ||| | || || || || | ||| |||||||||||||| || ||||| | | Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || ||| || || ||||| ||||| |||| | | |||||||| || || Sbjct 1262980 AAT-GTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 1262922 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||||||| |||||| ||| || | ||| | ||| || | | ||| || Sbjct 1262921 AATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAAC 1262862 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | || | ||||| || |||| ||||| ||||| ||||||||| Sbjct 1262861 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 1262813 Score = 105 bits (116), Expect = 6e-18 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||||||||| ||||||||| | ||| || ||| || | Sbjct 1263477 CAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTA 1263418 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || |||| || | ||| ||||| || || || || || |||||| || Sbjct 1263417 GCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAA 1263358 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||| | ||| || | ||| || || || | || | ||||| Sbjct 1263357 TTTTTGCTTTTACATTTTCAATGGTATCAGAAGCT-TCAACTTCAAGAGTAATAGTTTTT 1263299 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| || ||||| ||||| Sbjct 1263298 CCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || ||||||||||| ||||||||| | |||| ||| ||| || | ||||||| Sbjct 1264378 GTCGATTCTTTTTGAATATTGTAATCGG--AAAGTGTACGTCCATCTTCCAATTGTTTTC 1264321 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | | ||| ||||| ||||| || || || |||||| ||||||| || Sbjct 1264320 CAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTT 1264261 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | ||| || | ||| || || || | || | ||||| ||||| ||| Sbjct 1264260 TTACATTTTCAATGGTATCAGAAGCT-TCAACTTCAAGAGTAATAGTTTTTCCGGTAAGA 1264202 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| Sbjct 1264201 GTTTTAACGAAAATTTGCAT 1264182 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | ||| || ||||||||||| || |||||| | ||| || ||| Sbjct 1263710 CAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATC 1263651 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| | || | | |||||||| ||||| || |||||||| || Sbjct 1263650 TTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATC 1263591 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||||| |||||| | ||| | || || | |||| || ||||| | || | | Sbjct 1263590 TTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCT-TCAACCTCCAATGTAATGG 1263532 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || ||||| || || ||||| ||||| Sbjct 1263531 TTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || || | || | |||||| ||||||||||| ||||||||| Sbjct 1263270 TACCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGG 1263211 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | |||||| || || |||| | | ||| ||||| |||| Sbjct 1263210 AAAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAG 1263151 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || || |||||| |||||| | ||| | ||| || | ||| || Sbjct 1263150 GAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCT-TCA 1263092 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 1263091 ACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | ||| |||||||||||||| || ||||| | || || ||| Sbjct 1263938 CAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATC 1263879 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| | || | | |||||||| || || || |||||||| || Sbjct 1263878 TTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTATC 1263819 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||||| |||||| | ||| | || || | |||| || ||||| | || | | Sbjct 1263818 TTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCT-TCAACCTCCAAAGTGATGG 1263760 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || ||||| || || ||||| ||||| Sbjct 1263759 TTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | |||| || || ||||||||||| ||||||||| Sbjct 1264182 TACCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGG 1264123 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||||||||| |||| | | ||| || || |||| Sbjct 1264122 AAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAG 1264063 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||| || | ||| | || || | ||| || Sbjct 1264062 GAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCT-TCA 1264004 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || || || |||||||| || ||||| ||||| Sbjct 1264003 ACTTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817546554252