Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1112 127 4e-24 seq546 118 2e-21 >seq1112 Length=5701942 Score = 127 bits (140), Expect = 4e-24 Identities = 181/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 135593 TTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652 ||||| | |||| || || ||| || | ||| || | | | |||||||| ||||||| Sbjct 3493264 TTTAT-CTGATACAGTGGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATA 3493206 Query 135653 TAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711 | || |||| || |||||| ||| | ||| | || || || ||| || ||||| | Sbjct 3493205 TTGAT-TTAGTGAAATGGGCCGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTT 3493147 Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771 | |||||||||| ||||||||| |||||| || | || | | ||| | | ||||||||| Sbjct 3493146 GGCAAAATAGCTAGTGGTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGAT 3493087 Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATT 135831 || || || | | || |||||||| |||||||| ||||||||||||||| || Sbjct 3493086 CCATTAAAGCCTTTGGTCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTT 3493027 Query 135832 ACAGAAAAACA 135842 || | || ||| Sbjct 3493026 ACTGCAACACA 3493016 >seq546 Length=368327 Score = 118 bits (130), Expect = 2e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454 ||||| |||||||||| | || || | ||||| | |||||||||||| | | ||| Sbjct 22397 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTGTGG 22456 Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514 || || | |||| || ||||| | | |||||| |||||| | |||||| |||||||| Sbjct 22457 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGATTTTTAAGAATGTAT 22516 Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATC 189574 ||||| ||||| ||| | ||||||||| ||| |||||| ||||| | | | Sbjct 22517 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTTAAAATGGGCCAAT 22576 Query 189575 TATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT 189629 ||||| || || || || |||| || |||||||| || || ||||||| Sbjct 22577 TATTTAAATAATAAATATAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGTT 22631 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 |||||||||||||||||||||| || | || ||| | ||| ||||||| |||| Sbjct 22750 TAGGTTGTATGTGGTCTATTTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 22809 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| || ||||||||||||||||| ||| ||| |||||| | |||||| || Sbjct 22810 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAACATTGCTGAAT 22869 Query 189744 TT 189745 || Sbjct 22870 TT 22871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923168746357240