Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq624 109 6e-19 seq2 109 6e-19 seq180 107 2e-18 seq2087 105 8e-18 seq1766 102 9e-17 seq1 100 3e-16 seq1195 96.9 4e-15 seq2332 95.1 1e-14 seq2210 95.1 1e-14 seq1446 89.7 6e-13 seq2209 86.0 7e-12 >seq624 Length=355024 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60056 GAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 38751 GAAAAATAATCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 38810 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 38811 TACTAACCACTATACTACCGAGGA 38834 >seq2 Length=3515984 Score = 109 bits (120), Expect = 6e-19 Identities = 94/116 (81%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 60027 TAATCAGATAACAACAAATTAACGTTTATGAAAAATT---TTCTCCTCGGCAGGGAATCG 60083 |||| | |||| || ||| || || | |||| || |||||| |||| |||||||| Sbjct 1957218 TAATAATATAAAAAAAAAAGAAAAATTGTAAAAATTTAAATTCTCCCCGGCGGGGAATCG 1957277 Query 60084 AACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 ||||| ||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 1957278 AACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTAACGAGGATT 1957333 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1958140 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1958199 Query 60126 TACTACCGAGGATTGAATAT 60145 |||||||||||| | |||| Sbjct 1958200 TACTACCGAGGAATCTATAT 1958219 >seq180 Length=559476 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 341197 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 341256 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 341257 TACTACCGAGGATT 341270 Score = 105 bits (116), Expect = 8e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 355022 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 355081 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| |||||||| Sbjct 355082 TAACCACTATACTAACGAGGATT 355104 >seq2087 Length=947496 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 797691 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 797632 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 797631 TGACCACTATACTACCGAGGA 797611 >seq1766 Length=1490156 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| |||||||| || ||||| | ||| ||| ||||||||||| ||||| | Sbjct 1263953 TCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGA 1263894 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| |||||||| || || | || ||||| || | || Sbjct 1263893 AAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGG 1263834 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||| || |||||| ||| | | | | || || | ||| || Sbjct 1263833 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263774 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 1263773 CTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCATT 1263725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 1263725 TCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGA 1263666 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || ||||| |||||||| || || | || ||||| || | || Sbjct 1263665 AAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGG 1263606 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||| || |||||| ||| | | | | || || | ||| || Sbjct 1263605 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263546 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| ||||| || ||||| || || |||||||| Sbjct 1263545 CTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||||||||||| || ||||| ||||| ||| ||||||||||| ||||||| Sbjct 1263041 TCCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGA 1262982 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | || || | || ||||| || |||||||| || || | || ||||| || | || Sbjct 1262981 TAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 1262922 Query 43076 CACGCTCTCCTTGTCCATGATTTTT 43100 | | ||||||| | ||| |||| Sbjct 1262921 AATTCCTTCCTTGT-CTTGAATTTT 1262898 >seq1 Length=6352280 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 826537 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 826478 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 826477 ATACTAACGAGGATT 826463 >seq1195 Length=2644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 81 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 22 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 21 TAACCACTATACTATCGAGGA 1 >seq2332 Length=772421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 337536 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 337595 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 337596 TACTATCGAGGA 337607 >seq2210 Length=838879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 765830 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 765771 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 765770 TACTATCGAGGA 765759 >seq1446 Length=1996334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 1861915 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAG 1861856 Query 60136 GA 60137 || Sbjct 1861855 GA 1861854 >seq2209 Length=4115427 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | ||| || ||||| | ||| |||||||||||||| ||||| | Sbjct 648428 CCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAG 648487 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || |||||||| |||||||| || || | || |||||||| | || Sbjct 648488 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 648547 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| ||| | || | || | | | | ||||| | ||| || Sbjct 648548 ATTCCTTCTTTGTCC-TGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 648606 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| ||||| || || || || || ||||| ||||||||| Sbjct 648607 TTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800223892680