Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq613 123 2e-23 >seq613 Length=358256 Score = 123 bits (136), Expect = 2e-23 Identities = 154/205 (75%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| |||||| ||||| |||| ||| ||||||||||||||||| || Sbjct 259995 TTTCTTTTGCATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACAT 260054 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAG 16606 | ||||| || | |||||||||||||| || | || || | |||||||||||| || Sbjct 260055 TTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGAC 260114 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC-AAG 16665 | ||| | ||| | | || || || || |||||||| |||||||||||| || ||| Sbjct 260115 T-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAG 260173 Query 16666 -TATGTGTTTAATAAAAtttttttC 16689 ||| | | ||||||| |||||| Sbjct 260174 ACATGAGAT--ATAAAATGTTTTTC 260196 Score = 104 bits (114), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 || || ||||| | | ||||||||| || |||||||| ||||| || ||| | | | Sbjct 259386 CAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTA 259445 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| ||||| | || |||||| | ||| ||||||||||| | || ||| || || Sbjct 259446 CAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTG 259505 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT----TAATAAGTG 16221 || || || | || || | | ||| || | || |||| || | ||| Sbjct 259506 ACAGCATCCTTAATAATTGATGTGACT----CGTTCACAAGATGGTTTTTGTACAATGTG 259561 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 ||| ||||||| ||| |||||||||||||| ||||| Sbjct 259562 TTTGAACATTAAACATGCAAAATCACAATGTAATCC 259597 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||||||| | ||| | ||||||||||| |||||||| |||||||| ||||||| Sbjct 259214 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCTAAAGAAATATG 259273 Query 16003 TTCCATAAAATCAAAAGGATTTT 16025 |||||| |||||||| ||||||| Sbjct 259274 TTCCATGAAATCAAACGGATTTT 259296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497945416600