Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3 145 6e-30 >seq3 Length=676877 Score = 145 bits (160), Expect = 6e-30 Identities = 214/298 (72%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||||||||||| ||||| |||||||||||||| || || || || || ||||| Sbjct 624852 ATTTCCATTATTAACTACAAAACGTGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATG 624793 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTAAGATTTGGA 20161 ||||||||||||||| |||||| | | || || ||||||| ||| | |||||| Sbjct 624792 GTTTATTAAAGGATCCACAAATGC-AAAGAAATTAAGCGAAAAGGATGTTCATATTTGGG 624734 Query 20162 GCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGG 20221 || || | || | |||||| | ||| ||| | | |||| || | Sbjct 624733 ATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGGGAAGAAGGAG 624674 Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| |||||| | |||||||||||||||||||||||||| || |||| || ||| Sbjct 624673 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATATGT 624614 Query 20282 ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTT-ATTAATTTAATTA 20338 ||| | ||||| |||| ||| ||| | |||| | ||| || | |||||||||| Sbjct 624613 ACAAAGATTATAATGGAGAAG--GTAAAACAATAATCTAATATTCCTAAATTTAATTA 624558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 20308 GATCAATTACAAAATGTTATTAATTTAATTANNNNNNNNCCAAACGACAGAAGAATTATT 20367 ||||||||| || | ||||| || ||| || || || ||||||||||| Sbjct 624505 GATCAATTAAAAGAAGTTATAGATAAAATACGATATTCTCCCAATGATAGAAGAATTATA 624446 Query 20368 TTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTA 20427 | || ||||| | | ||| | || ||||||||| ||||| |||||| || | Sbjct 624445 ATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT-TGTTT 624387 Query 20428 TG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGA 20486 | |||||||| || ||| | ||||| || || ||| | |||||| || || || Sbjct 624386 CGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTTATCAAAGAAGTGCGGA 624327 Query 20487 TATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGC 20546 |||||| || ||||| || || ||||||||| |||| | || | | ||||| | || Sbjct 624326 TATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTGTTAATTTATATACTGGC 624267 Query 20547 ACATGTTACAGATTTAAA 20564 |||| ||||| | || || Sbjct 624266 ACATATTACAAACTTGAA 624249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172173051295