Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq613 111 2e-19 >seq613 Length=358256 Score = 111 bits (122), Expect = 2e-19 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || | |||||||| ||||| ||||||||||| |||| || || ||||||||| || Sbjct 259377 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 259436 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 259437 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 259496 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || | ||||||| | | | | | | ||| || | || | Sbjct 259497 TCAATTTTGACAGCATCCT---TAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGT 259553 Query 14186 AGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||||| || |||||||| |||||||||||||| | |||| Sbjct 259554 ACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 111 bits (122), Expect = 2e-19 Identities = 136/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||| | | || ||| ||||||||||| | || ||||||||| || || | Sbjct 259993 CCTT-TCTTTTGCATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAA 260051 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-T 14572 |||||||| || | ||||||||||||||||| | || |||| |||||| || | Sbjct 260052 CATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTT 260111 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 || | ||||| ||| | | ||| ||||| || || |||||| ||||||||||||||| Sbjct 260112 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 260170 Query 14633 AA 14634 || Sbjct 260171 AA 260172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || || ||| |||||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct 259203 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCT 259262 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT 14001 | || |||| |||||| |||||||| |||||| ||||| Sbjct 259263 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACAT 259303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| |||||| || || ||||| | ||||||||| | |||| |||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||||||| || || || ||||| || |||||| || || || ||||||||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | || ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||||||| || | | || |||| ||||| |||||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATAA 259917 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 14693 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACC 14752 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 260307 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 260366 Query 14753 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || || || || ||||||||||| |||||||| Sbjct 260367 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 260404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482330942723080