Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq1236 98.7 1e-15 seq3 87.8 2e-12 >seq1236 Length=152982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 19429 AAAAATATATCTAGGACTTGCTGCATCTTTTCCTCCAGAAAGTCTCGTGCCAAATTGGCC 19488 ||||||||||| |||||||||||||||||||||||| | |||||| || |||||||| || Sbjct 60864 AAAAATATATCGAGGACTTGCTGCATCTTTTCCTCCTGCAAGTCTTGTACCAAATTGACC 60923 Query 19489 ATCCTCTTCTAAAAGAGGTATGTTATTGGCTCCAACAAAAGTTTGTGCCATTTTAATGAT 19548 | || | | ||| ||||| ||| || ||| ||||||| | ||||| || Sbjct 60924 AATTGGTTGAAGTAAGTTTATATTATTACTTCCTACGAAATTTTGTGCAAGATTAATAAT 60983 Query 19549 AG-TGTCAAATAGATTTTGTTCTCCATGTTTATAATCTGTTTTTTGTGCTACGAAAGCTC 19607 || || || | ||| ||||||||| | ||| ||| | || ||||| || | Sbjct 60984 AGTTGACATA-AGAGAAACTTCTCCATGGTGATATGCTGAATGTTCAGCTACAGAACCAG 61042 Query 19608 CTAATTGGGCAACTTT 19623 | ||||| |||||||| Sbjct 61043 CCAATTGTGCAACTTT 61058 >seq3 Length=676877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/213 (69%), Gaps = 15/213 (7%) Strand=Plus/Minus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||||||||||| ||| | ||| ||||| |||| |||| | | |||||||| | ||| Sbjct 624460 GATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCT 624401 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 |||||||||||| | | || ||| ||||||| |||| |||||| Sbjct 624400 CCTTGTCATTGTTTCGTTCAATTTTATGTAAG---------CAATG------AAGAATTA 624356 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 || || || | | ||||||| ||| |||||||| | || || || ||||| || ||| Sbjct 624355 TCATGCCAACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCA 624296 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCAT 104742 |||| | || |||| ||||| | || ||| Sbjct 624295 TCTTATTCTTTGTTAATTTATATACTGGCACAT 624263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679793742139920