Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq613 118 9e-22 seq2209 111 1e-19 seq1766 109 5e-19 >seq613 Length=358256 Score = 118 bits (130), Expect = 9e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||| | | ||||||| || || || || ||||| || || || ||||| || || || Sbjct 260197 TGAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATCGTCAA 260138 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||| | || ||| ||||| |||||||| ||| | || ||||| | || ||||| Sbjct 260137 TGAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTTTA 260078 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||||| ||||| ||||| || ||||||||||||||||| | | || ||||| Sbjct 260077 TGGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATAC 260018 Query 57848 GTA 57850 || Sbjct 260017 ATA 260015 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||| | ||| |||| ||||| ||||||||||| | ||||| ||| ||| || || Sbjct 260431 GAGCCATTATTGAAAGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGAT 260372 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| ||||| || |||||||| |||||||| || |||||||| || || Sbjct 260371 ATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTGGATCTT 260312 Query 57630 TCTAA 57634 ||||| Sbjct 260311 TCTAA 260307 >seq2209 Length=4115427 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| ||||| | || |||||| | || Sbjct 648654 ATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTCA 648595 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || |||||| ||||| | || || |||||| Sbjct 648594 GACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCAG 648535 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| |||||| | ||||| | ||| | |||||||| Sbjct 648534 CAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAAT 648475 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || || ||| | ||| | ||||| || || |||| Sbjct 648474 ATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGGTA 648426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||| | ||||| ||||| |||||| | || |||||| | Sbjct 648886 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGC 648827 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | || ||| | || || || || || | || || || Sbjct 648826 TTCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGA 648767 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || ||||||||||| | ||||| || || | ||||| Sbjct 648766 TCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTA 648707 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||| ||||| || ||||||||||| ||| | ||||| Sbjct 648706 TAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 648665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| || || ||||| ||||| | || |||||| | || Sbjct 664303 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 664244 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || || || ||||| | || ||||| ||| Sbjct 664243 GATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCAG 664184 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGATTAT 31369 || || | || || ||||| ||||| | ||||| | | || || | || |||| Sbjct 664183 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGA-TGGAAGAACACTCTCAG--ATTAC 664127 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||||||||| ||||||||||||||| | ||||| Sbjct 664126 AATATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACT 664086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || ||||| || || ||| | || |||||| | || Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | || || || ||||| | || || || ||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 663728 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||||||||| | ||||| || || | |||||||| Sbjct 663727 CAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAAT 663668 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| ||||| || ||||||||||| ||| | ||||| Sbjct 663667 ATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 663630 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || || | || |||||| | || Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| ||||| |||||||| | | | || | |||||| || Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGA-TGGACGTACACTTTCCGATTACAA 1264360 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||||||||||||||||| || |||||| | || | || ||| || Sbjct 1264361 TATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCGA 1264412 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| ||||| || || || || | || |||||| | ||| Sbjct 1263954 ATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTCC 1264013 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 1264014 GATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 1264073 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||| || ||||| | ||| | |||||| || Sbjct 1264074 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1264133 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || || ||||| || Sbjct 1264134 ATTCAAAAAGAATCAACCCTCCATCTTGT 1264162 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || ||||| || || | || |||||| | || Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT 1263557 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || ||||| || | || || || ||| Sbjct 1263558 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1263617 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| |||||| ||||||| | ||| | ||||||||| Sbjct 1263618 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAAT 1263677 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||||||||| || || ||| | ||| Sbjct 1263678 ATTCAAAAAGAATCAACACTACATTTAGTA 1263707 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || ||||| ||||| | || |||||| | || Sbjct 1263726 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATCT 1263785 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || ||||| || | || || || ||| Sbjct 1263786 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCAG 1263845 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| |||||| ||||||| | || | |||||||| Sbjct 1263846 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 1263905 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||| ||||| || ||| | ||| Sbjct 1263906 ATTCAAAAAGAGTCGACACTACATTTAGTA 1263935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || || | || |||||| | || Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| | ||||| | ||| | |||||| || Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || ||||| || || Sbjct 1263450 ATTCAAAAAGAATCAACCCTCCATCTTGTTCT 1263481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| || || | || |||||| | || Sbjct 1263042 ATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCA 1263101 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||| || ||||| | || || || || Sbjct 1263102 GATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCAA 1263161 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || |||||||||||||| ||| | |||||| || Sbjct 1263162 CAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 1263221 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || |||||||| || Sbjct 1263222 ATTCAAAAAGAATCTACACTTCATCTTGT 1263250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752854273520