Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 7e-15 seq613 95.1 2e-14 >seq3 Length=676877 Score = 96.9 bits (106), Expect = 7e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 |||||||||| || || ||||| ||||||||||| || ||| ||| |||||| | | Sbjct 624462 ATGATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTAC 624403 Query 35589 CTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTG 35647 |||| || || || | | |||||||||||| |||| |||||| || ||||| | Sbjct 624402 CTCCTTGTCAT-TGTTTCGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTT 624344 Query 35648 TATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCT 35704 ||||| |||| | ||| | || | || || || || ||||||||||| || ||| Sbjct 624343 TATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCT 624287 >seq613 Length=358256 Score = 95.1 bits (104), Expect = 2e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| ||||||||||| ||||| || |||||||||||| ||||| | ||||||||| Sbjct 259818 GTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGGTAGTTTCGCCGCTATTTTCTGG 259759 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| || |||| || || || | | ||||||| | |||||||| || Sbjct 259758 TTAAAAAAGAGAGGTCTTATGCCAGGACTTACATTCAGCAATGAGCTTATTTCTAGAGAT 259699 Query 102038 GAAGGTC 102044 | ||||| Sbjct 259698 G-AGGTC 259693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989553177241605