Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq69 149 8e-31 seq613 143 3e-29 seq2 89.7 6e-13 >seq69 Length=621926 Score = 149 bits (164), Expect = 8e-31 Identities = 226/314 (72%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || || ||||| | ||||||||| | ||| || |||| |||| ||||| | || | | Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT-TGG 547316 Query 63513 CCT-CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | || || || |||||| | || | | || || || || || || ||| | Sbjct 547315 TGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAA 547257 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTA 63629 | | ||| |||| |||||| |||||||| || ||||| || ||||| || ||| ||||| Sbjct 547256 TAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTA 547197 Query 63630 AGTAGAAAACAGCT 63643 | || ||||||||| Sbjct 547196 A-TAAAAAACAGCT 547184 Score = 136 bits (150), Expect = 5e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 || || || ||| || | | ||||| ||| || || || |||| ||| | | | | Sbjct 549455 TGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTT 549396 Query 62355 TCGGTTAAAACTC-TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 || |||||| ||| ||| || || || || || ||||| || ||||| |||| |||||| Sbjct 549395 TCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 | ||||| ||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 549233 Score = 132 bits (146), Expect = 6e-26 Identities = 266/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 548681 Query 62905 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 548680 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 548621 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 ||||||| || || |||| | | | ||| || | | || || || | |||||||| Sbjct 548620 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 548561 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 548560 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCA 548501 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 548500 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTC 63169 ||| ||| ||||| |||||| ||| Sbjct 548440 GAATTTGTCGTTTATATCT--TTTCTCATTC 548412 Score = 109 bits (120), Expect = 7e-19 Identities = 183/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | ||| || || || |||||| ||| ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | ||||||||| ||||| ||||||||||| | ||| | |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 63882 TAAATAATAACCGAATTGAGCTTAT 63906 ||||| || | ||||| | ||||| Sbjct 546876 TAAATTATTGCAGAATTTAACTTAT 546852 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || | |||||||||| |||| | |||| |||||| |||||||| || | Sbjct 548106 TTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGACACATTAAAGT 548047 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| | | |||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 548046 CCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 547988 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||||| ||||| ||| || || ||||| Sbjct 547987 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| | | ||| |||| ||| || || ||||| ||| Sbjct 549043 CCTTCATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCA 548984 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | |||||||| || | |||| || | ||||||||| || |||||| Sbjct 548983 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 548924 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 |||||| | | || ||| || || || | ||||||| |||||||| Sbjct 548923 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 >seq613 Length=358256 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| || ||| ||||| || || | | ||||||||| ||||||| ||||| ||||| Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 | ||||| || || ||||| | ||||| || || || |||||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | ||| ||||| || ||||||||| ||||||||||| || || ||||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 34022 AAAATATTTTTCGTCTG-GTGTTAGTTTATTCCAATCA 34058 ||||| |||||| ||| |||| |||||||||||| Sbjct 260185 AAAATGTTTTTC-ACTGTCAGTTAAATTATTCCAATCA 260221 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 260414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| |||||| ||||| ||||| |||||| || || || ||||| ||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || |||| ||||||||||||||||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/223 (69%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||||| | || ||||| || ||||||||||| || ||||| |||||| ||| Sbjct 259380 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 259439 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | || ||| ||||| ||||| | || ||| || | || | || | ||||||||||||| Sbjct 259440 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 259499 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG---ATGTAAT 33563 || || |||| | ||||| || | || | ||||| | ||| |||| Sbjct 259500 ATTTTGACAGCATCCTTAATAATTGATGTGAC---TCGTTCACAAGATGGTTTTTGTACA 259556 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 259557 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 >seq2 Length=3515984 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 155304 GGCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGT 155363 |||| | || |||| |||| |||||| | || ||||| ||||| ||||| ||| | || Sbjct 3435431 GGCGATGAAGAAATGTCCAAACGGAATGCTGGCCGAAGTGAAATATGATGGAGAACGCGT 3435490 Query 155364 ACAAGTTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACT 155423 ||||| ||||| ||| |||| ||| || |||||| ||| | ||||||| || || Sbjct 3435491 TCAAGTGCATAAGAAAGGGGACGAATTTCGATACTTTAGCAGATCCTTGAAACCGGTGCT 3435550 Query 155424 CTCTCATAAAGT 155435 ||||||||||| Sbjct 3435551 TTCTCATAAAGT 3435562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798461417680