Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq69 187 2e-42 seq613 159 3e-34 >seq69 Length=621926 Score = 187 bits (206), Expect = 2e-42 Identities = 229/311 (74%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 ||| ||||||||||||| | | |||| ||| || || || | || ||| | || | | Sbjct 549456 TTGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTT 549397 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 ||| |||| |||| ||| ||||||||||| ||||| ||||| || | |||||| Sbjct 549396 TTCAGTTAAATCTCGTAATAAGTGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 |||||| || |||||||| || |||||||| || || |||||||| | ||| ||||| | Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 || ||||| || ||||| ||||| |||| | |||||| | ||||||| || ||| Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 549217 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCA 37341 | | ||||| | | ||||||||||||||| ||||| | | || ||||||||| Sbjct 549216 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATT--CCACATATCG 549159 Query 37342 TATTGTAGAAT 37352 ||||||| ||| Sbjct 549158 TATTGTAAAAT 549148 Score = 140 bits (154), Expect = 3e-28 Identities = 214/301 (71%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | || ||| || || ||||| || ||||||||||||| ||| || | | Sbjct 547483 TTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGCAAA 547424 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 |||||| |||||||||| ||||| |||| || ||||| | |||| ||||| |||| ||| Sbjct 547423 TGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATACTCT 547364 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || | | |||||||||| || | |||| | ||| ||||| | || Sbjct 547363 AATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGC 547304 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATT 38332 ||| ||| | || | ||| || ||||| || || |||| || ||| || ||| Sbjct 547303 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTGCTAATAAGTGCACATC 547245 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||| || ||| | || ||||| ||||| || || | |||| || || |||||| | Sbjct 547244 TTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAAAACAGC 547185 Query 38393 T 38393 | Sbjct 547184 T 547184 Score = 109 bits (120), Expect = 5e-19 Identities = 245/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 ||||||| ||||||||| | ||| ||| | | |||| | ||||||||||||| Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGT----ATTTTCGTAATTATTCTCAACTTG 37653 ||| || ||||| | ||||| || ||| ||||| || | | ||| || || Sbjct 548737 CATCGATAATTTTGTCCAGATT----ACAAGTAACAATTTTTGTTACT-TTCAGAAGTTT 548683 Query 37654 TCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAG 37706 | ||| || |||| | ||| ||| ||||| || | | | ||| || ||| Sbjct 548682 TTGAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAA 548623 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 |||||| ||||||||||||||| | | | || | || |||||||| | |||||| Sbjct 548622 ATTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACT 548563 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | |||||||| | ||| ||||| ||||| ||| ||| ||||||||| || Sbjct 548562 ACTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAG 548503 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 ||||| || |||||| ||| | ||||| | ||||| | |||||||| ||| || Sbjct 548502 CATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGC 548443 Query 37887 TTTAA 37891 || || Sbjct 548442 TTGAA 548438 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||||||||| || |||||| | ||| || || | |||| Sbjct 549736 CCATTTTCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATAT 549677 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || |||||||||| ||||| Sbjct 549676 GAACATTTAATGATTGCGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAA 549617 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA- 37035 | |||||| | ||| |||||||| |||||||| | ||||| || |||||||| | Sbjct 549616 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTTAAATCATCTGGTATAC 549557 Query 37036 --TCTAAAT-GTTGAATAGAACCATT 37058 |||| || | ||||| || |||| Sbjct 549556 GTTCTATATCCTAGAATAAAAACATT 549531 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 ||| | ||| |||||||||||| | || | ||| || ||| ||||||| |||||||| Sbjct 547084 AAAAAGTGTTGGAGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTAT 547025 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | | || ||||| | || || ||| | | | || ||||||| |||||| ||||| Sbjct 547024 AGCTTTGTCAATATCTTCACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGG 546965 Query 38544 TCTTTCTATTATTTTATTAT-TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||| | || ||| || | | ||||| || ||| | |||| | ||||| | | Sbjct 546964 TCTTTCAACTACTTTTCCATGTATTTTTAA-TAAATAACTTCTTTCAAGCGTTTTGAAAC 546906 Query 38603 CAAAATAACTATATGAATAATCTCTATCGTA 38633 |||||||| |||| | |||||||||| || Sbjct 546905 CAAAATAATTATAACTAAAATCTCTATCATA 546875 >seq613 Length=358256 Score = 159 bits (176), Expect = 3e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||||||||| ||||| ||| ||||||||||||||||| ||||||||| || | |||||| Sbjct 260014 ATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAA 260073 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| ||||| |||||||||| ||||| || | ||||| ||| | | ||| Sbjct 260074 ACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATT 260133 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||| || || |||||| || |||||||||||||| | ||| |||||| | ||| Sbjct 260134 CTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTT 260193 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 ||| | |||||| |||| ||||||| || ||| Sbjct 260194 TTCACTGTCAGTTAAATTATTCCAATCAAATACATC 260229 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||||||||| ||| | |||||||||||| || ||||| ||||| ||| || Sbjct 259377 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 259436 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||| ||||| ||||| | || || || | ||| |||| ||||| || | | Sbjct 259437 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 259496 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || ||||| | || || || || | ||| ||||||| |||| Sbjct 259497 TCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACA 259556 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||| ||||||||||| ||||||||||||||||| || Sbjct 259557 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 259597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468510562702640