Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq69 183 4e-41 seq613 152 7e-32 >seq69 Length=621926 Score = 183 bits (202), Expect = 4e-41 Identities = 230/311 (74%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 || || || ||| || ||| ||||| ||| || || || |||| ||| | | | | Sbjct 549455 TGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTT 549396 Query 79027 TCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || |||||| ||| ||| || || ||||| || |||||||| ||||| |||| |||||| Sbjct 549395 TCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 | ||||| ||||| ||||| |||||||| | |||||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG-- 79203 |||||||| |||||||||||||| | || ||| |||||||| || ||| | | Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCA 549219 Query 79204 ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263 ||||| | ||| | | ||||||||| | || || || | ||||||||| | ||| Sbjct 549218 ATTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCG 549159 Query 79264 TATTGTAGAAT 79274 ||||||| ||| Sbjct 549158 TATTGTAAAAT 549148 Score = 143 bits (158), Expect = 4e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 ||||| || | |||| |||| ||| |||||||| ||||| | |||| ||| || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 547317 Query 80185 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || || || |||||| | || | | || || || || || || ||| Sbjct 547316 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 547258 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTT 80300 || | ||| |||| |||||| || ||||| || || || || ||||| ||| ||| |||| Sbjct 547257 ATAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 547198 Query 80301 AAGTAGAAAACAGCT 80315 || || ||||||||| Sbjct 547197 AA-TAAAAAACAGCT 547184 Score = 123 bits (136), Expect = 4e-23 Identities = 264/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 ||| |||||||| | ||||| | | || ||| |||| || | | ||||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 548681 Query 79577 GAAAATCAAATCGTCCATCTA------TTACAAACATGTTCAACGCGACAGATGCCAGAT 79630 ||||||||||| | || | |||||||||| || | || | || || | || Sbjct 548680 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 548621 Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690 |||| || || || |||| | | | ||| || | | ||| || || | ||||||| Sbjct 548620 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 548561 Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 548560 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCA 548501 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810 | | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 548500 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Query 79811 TTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 || | | | | ||| ||||||||| ||| Sbjct 548440 GAAT--TTGTCGTTTATATCTTTTCTCATTC 548412 Score = 107 bits (118), Expect = 3e-18 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 80678 CACTAAATAGttttt-ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 ||||||| ||||||| ||||||| || || ||||| || | || |||| || ||||| Sbjct 546668 CACTAAA-AGTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAAT 546610 Query 80737 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 || |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || Sbjct 546609 ATTGCATAATCTGGATGTTTGGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCT 546550 Query 80797 AATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 ||||| || || ||||| || ||||| || |||||| Sbjct 546549 AATTCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 546509 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||||||| ||||| ||||||||||| | || || |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||| | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 80554 TAAATAAT 80561 ||||| || Sbjct 546876 TAAATTAT 546869 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 ||||||| | ||| || || | ||||||||||| | || |||||| |||| | | Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||||| || | ||| ||| |||| |||||||||||||| |||||||| |||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 79967 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 547999 ATAGAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | |||| | || || | |||||| || || ||||| || || ||| Sbjct 549037 TAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCACCATAA 548978 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || | ||||| || || | |||| || | |||||||||| || |||||||||||| Sbjct 548977 TATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATAA 548918 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || ||| || ||||| | ||||||| |||||||| Sbjct 548917 CGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 >seq613 Length=358256 Score = 152 bits (168), Expect = 7e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||| || ||| ||||| || || | | ||||||||| ||||||| ||||| ||||| Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 | ||||| || || ||||| | ||||| || || || |||||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | | ||| ||||| || ||||| ||| ||||||||||| || || ||||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 |||||||||||| || |||| |||||||||||| Sbjct 260185 AAAATGTTTTTCACTGTCAGTTAAATTATTCCAATCA 260221 Score = 109 bits (120), Expect = 8e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 260414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| |||||| |||||| ||||| ||||| |||||| || || || ||||| ||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 || || |||| ||||||||||||||||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||||| | || ||||| || |||||||| || |||||||| |||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG- 49934 ||||||||||| || ||||| | ||||| ||| | || | ||||| | ||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 259547 Query 49935 --ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 259548 TTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| || || ||| || || ||||| ||||| || || | ||||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | || || ||| |||||| || ||||||||||| ||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | | || | || | || || ||||| |||||| ||| ||||||| | Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 | || ||| ||||| |||| |||| || || ||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAA 259914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246973606840