Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq613 123 2e-23 >seq613 Length=358256 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || | |||||||| ||||| ||||||||||| |||| ||| || ||||||||| || Sbjct 259377 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 259436 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 259437 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 259496 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT-AGAAGGAGGATATTT 13852 || || ||||| || || ||||| ||| | ||| || | ||| || | || Sbjct 259497 TCAATTTTGACAGCATCCTTAATAATTGATGTGA----CTCGTTCACAAGATGGTTTTTG 259552 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 259553 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 102 bits (112), Expect = 8e-17 Identities = 134/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||| | | || ||| ||||||||||| | || ||||||||| || || | Sbjct 259993 CCTT-TCTTTTGCATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAA 260051 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-C 14240 |||||||| || | |||||||||||||| || | || || | ||||||||| Sbjct 260052 CATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTT 260111 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 || | ||||| ||| | | ||| ||||| || || |||||| ||||||||||||||| Sbjct 260112 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 260170 Query 14301 AA 14302 || Sbjct 260171 AA 260172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| |||||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct 259203 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCT 259262 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACAT 13669 | || |||| |||||| |||||||| |||||| ||||| Sbjct 259263 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACAT 259303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| |||||| || || ||||| | ||||||||| | |||| |||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || || || || || |||||| || || || ||||||||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||||||| || | | || |||| ||||| |||||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATAA 259917 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 14361 ttAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 260307 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 260366 Query 14421 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTT 14473 || || || || ||||||||||| |||||||| || ||| ||||||| Sbjct 260367 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTT 260419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713422265400