Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq613 111 2e-19 >seq613 Length=358256 Score = 111 bits (122), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || | |||||||| ||||| | ||||||||| |||| ||| || ||||||||| || Sbjct 259377 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 259436 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 259437 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 259496 Query 13582 TCTATAGACACAGCCTCGTTTATAATA-ATCTTAATAATGTCATTAGAAGGAGGATATTT 13640 || || ||||| || || ||||| || | | | | | | ||| || | || Sbjct 259497 TCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGT----TCACAAGATGGTTTTTG 259552 Query 13641 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 259553 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||| | | || ||| ||||||||||| | || ||||||||| || || | Sbjct 259993 CCTT-TCTTTTGCATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAA 260051 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-C 14028 ||||| || || | ||||||||||||||||| | || |||| |||||| || Sbjct 260052 CATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTT 260111 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 || | ||||| ||| | | || ||||| || || |||||| ||||||||||||||| Sbjct 260112 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 260170 Query 14089 AA 14090 || Sbjct 260171 AA 260172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| |||||| || || ||||| | ||||||||| | |||| |||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || || ||||| || |||||| || || || ||||||||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 13802 CTATTAGTCGTTCTCCAAACGATG--CTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 | | || ||||| ||| | | |||| || || |||||| ||| ||||| | Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTT--TATCCAATTTAACGCCCAATG 259872 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || ||||||| || | | || ||||||| || || ||||| Sbjct 259873 AGCTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATAA 259917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| |||||||||||| | ||| |||||||||| ||||| ||||||||||| Sbjct 259203 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCT 259262 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACAT 13457 | || |||| |||||| ||||| || |||||| ||||| Sbjct 259263 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACAT 259303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14208 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 260307 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 260366 Query 14209 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAAT 14267 || || || || ||||||||||| |||||||| | ||| ||||||| | | Sbjct 260367 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTTCAATAA 260425 Query 14268 TGGCTC 14273 |||||| Sbjct 260426 TGGCTC 260431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574256882840