Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1766 131 1e-25 seq2209 109 4e-19 >seq1766 Length=1490156 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| ||| || | ||| | || || ||||| | |||||||||||| Sbjct 1263268 CCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 1263209 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| ||||| |||||||| ||||||| ||||||||| | || Sbjct 1263208 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 1263149 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || |||| || | ||| || || ||| || || Sbjct 1263148 ATACCTTCTTTATC-CTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAAC 1263090 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || || ||||| ||||||||||||||| Sbjct 1263089 TTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | ||||||| | || ||||||||||| || ||||| Sbjct 1264372 TCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAG 1264313 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||||||||| | || | ||||||||| || || |||| || | Sbjct 1264312 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 1264253 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || || | || |||||||||||||| |||||||| || Sbjct 1264252 TCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACG 1264193 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 1264192 AAAATTTGCAT 1264182 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||||| || || ||||| | |||||||||||| Sbjct 1264180 CCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 1264121 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || ||||| ||||||| |||||| || | || Sbjct 1264120 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 1264061 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || |||| || | ||| || ||| ||| || || Sbjct 1264060 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACT 1264001 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||| ||||| || |||||||| || |||||||||||| Sbjct 1264000 TCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | ||||| | || || | ||||| |||||||| Sbjct 1263460 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAG 1263401 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| || ||||||||| | || | ||||||||| || || |||| || | Sbjct 1263400 ATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 1263341 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || || | || ||||||||||| || |||||||| || Sbjct 1263340 TCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGACG 1263281 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 1263280 AAAATTTGCAT 1263270 >seq2209 Length=4115427 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| ||||| ||||||| || |||||||| | ||| ||||| || Sbjct 663849 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 663908 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||||||||| |||||||||||||| |||||||| | || Sbjct 663909 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 663968 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | || || ||| || || Sbjct 663969 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 664028 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || |||||||| ||||| ||||||||| Sbjct 664029 TCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || || | ||| | ||| ||| || || | ||| ||||| || Sbjct 648656 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 648715 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||||||||| ||||||||||| || |||||||| | || Sbjct 648716 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 648775 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| |||| || | | | |||||| ||| || || Sbjct 648776 ATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 648835 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || |||||||| |||| ||| || ||||| || |||||||| Sbjct 648836 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 648885 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || ||||| || ||||| || ||||| || | || || || || | ||||||||| Sbjct 663390 TCTCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCT 663449 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | | ||| | | | || || | |||||| || |||||||||||||| || ||||| | Sbjct 663450 AAGAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGA 663509 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | |||||||| || ||| | || || | | | ||| || ||| || Sbjct 663510 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCA 663569 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || ||||| ||||| || |||||||| ||||||||||||||| Sbjct 663570 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 663620 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| || || ||||||| || |||||||| | ||| ||||| || Sbjct 648428 CCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAG 648487 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | ||||| || ||||||||||| || || || || | || Sbjct 648488 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 648547 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| | || || | | | |||||| ||| || || Sbjct 648548 ATTCCTTCTTTGTC-CTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 648606 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || || |||||||| ||||||||||||||| Sbjct 648607 TTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || || | ||| | ||| ||| || || | ||| ||||| || Sbjct 663621 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 663680 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||||||||| ||||| |||||||| || ||||| | || Sbjct 663681 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 663740 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | | | ||| || ||| || || Sbjct 663741 ATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACT 663800 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || |||||||| |||||||||||||| Sbjct 663801 TCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358300852998