Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq69 159 5e-34 seq613 150 2e-31 seq2 86.0 8e-12 >seq69 Length=621926 Score = 159 bits (176), Expect = 5e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 || || || ||| || ||| ||||| |||||| || || |||| ||| | | | | Sbjct 549455 TGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTT 549396 Query 71110 TCGGTTAAAACTC-TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| ||| ||| || |||||||| || |||||||| ||||| |||| |||||| Sbjct 549395 TCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | ||||| ||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 |||||||| || ||||||||||| | || | | |||||||| |||||| Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGT 549225 Score = 141 bits (156), Expect = 1e-28 Identities = 225/316 (71%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 ||||| || | |||| || | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 547317 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || || || ||||| | || ||| || || || || || || ||| Sbjct 547316 GTGTACCTCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTGCT 547259 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 72382 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| ||| Sbjct 547258 AATAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGT 547199 Query 72383 TAAGTAGAAAACAGCT 72398 ||| || ||||||||| Sbjct 547198 TAA-TAAAAAACAGCT 547184 Score = 136 bits (150), Expect = 5e-27 Identities = 267/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||||| ||| || || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| |||||||| | ||||| | | || ||| |||| || | | ||||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 548681 Query 71660 GAAAATCAAATCTCCCATCTA------TTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||||||||| | || | ||||||||| || | |||| || || | || Sbjct 548680 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 548621 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 |||| || || || |||| | | || ||| || | || ||| || || | |||||||| Sbjct 548620 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 548561 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 548560 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCA 548501 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 548500 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTC 71924 || | || | ||| ||||||||| ||| Sbjct 548440 GAAT--TTGTCGTTTATATCTTTTCTCATTC 548412 Score = 104 bits (114), Expect = 3e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 72761 CACTAAATAGttttt-ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819 ||||||| ||||||| ||||||| || || ||||| || | || |||| || |||| Sbjct 546668 CACTAAA-AGTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAAT 546610 Query 72820 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCC 72879 || |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || Sbjct 546609 ATTGCATAATCTGGATGTTTGGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCT 546550 Query 72880 AATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 ||||| || || ||||| || ||||| || |||||| Sbjct 546549 AATTCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 546509 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||||||||||||| ||||||||||| | || || |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 72637 TAAATAATAACCGAATTGAGTTTAT 72661 ||||| || | ||||| | |||| Sbjct 546876 TAAATTATTGCAGAATTTAACTTAT 546852 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||| || || |||| |||| || || || |||||||| || || ||||| || Sbjct 549043 CCTTCATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCA 548984 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 548983 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 548924 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 548923 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 ||||||| | ||| || || | |||||| ||| | || |||||| |||||| | Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 ||||||| || | ||| ||| ||| |||||||||||||| |||||||| |||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 547999 ATAGAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 >seq613 Length=358256 Score = 150 bits (166), Expect = 2e-31 Identities = 166/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| || ||||||||| || || | | ||||||||||||||||| ||||| ||||| Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 | ||||| || || ||||| | ||||| || | ||||||||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | | ||| || || || ||||| ||| ||||||||||| || || ||||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 42505 AAAATATTTTTCGTCCGGT--GTTAATTTATTCCAATCA 42541 ||||| |||||| | || ||||| |||||||||||| Sbjct 260185 AAAATGTTTTTC--ACTGTCAGTTAAATTATTCCAATCA 260221 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | ||| |||||||| || |||||||| |||||||| || ||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| |||||| | ||||||| || |||| |||||||||| ||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 260414 Score = 89.7 bits (98), Expect = 7e-13 Identities = 161/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||||| | || ||||| || ||||||||||| | ||||| |||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 42039 ||||||||||| ||| || || | ||||| ||| | || | ||||| | ||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 259547 Query 42040 ----ATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||||| ||||| ||||| |||||||| ||||| || || | |||| Sbjct 259548 TTTTGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | || ||| || || ||||| ||||| || || | ||||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| || || ||| |||||| || ||||||||||| ||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 ||| | | || | || ||||| ||||| |||||| ||| ||||||| | Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 | || ||| ||||| |||| |||| || || ||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAA 259914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 || || |||| ||||||||||||||||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 >seq2 Length=3515984 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 165092 GGCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGT 165151 |||| | || |||| |||| |||||| | || ||||| ||||| ||||| ||| | || Sbjct 3435431 GGCGATGAAGAAATGTCCAAACGGAATGCTGGCCGAAGTGAAATATGATGGAGAACGCGT 3435490 Query 165152 ACAAGTTCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACT 165211 ||||| ||||| ||| |||| ||| | |||||| ||| | ||||||| || || Sbjct 3435491 TCAAGTGCATAAGAAAGGGGACGAATTTCGATACTTTAGCAGATCCTTGAAACCGGTGCT 3435550 Query 165212 CTCTCATAAAGT 165223 ||||||||||| Sbjct 3435551 TTCTCATAAAGT 3435562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118805757560