Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2209 93.3 4e-14 seq1766 89.7 4e-13 >seq2209 Length=4115427 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||||||||| | || || |||| |||||| ||||| || || |||||||||||||| Sbjct 663392 TCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAA 663451 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | ||| | | || || || ||||| || ||| |||| | || |||||||| || Sbjct 663452 GAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 663511 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || ||| || ||||| | | | ||||| || || Sbjct 663512 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAAC 663571 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| || || || || | |||||||||||||||||||||| Sbjct 663572 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 663620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | || || |||| || | ||||| || ||||||||||||||||| | Sbjct 664075 TTCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTG 664134 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || || ||||| || ||| | || | || |||||||| | Sbjct 664135 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAG 664194 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||| || ||||| | | | |||||| || || Sbjct 664195 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAA 664254 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || |||||||| || || | |||||||||||| ||||||||| Sbjct 664255 CTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | || || || | || | |||||||| || |||||||| ||||| | Sbjct 648654 TTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 648713 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || || ||||| || ||| |||| | | || ||||| | Sbjct 648714 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 648773 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||| || ||| || |||||| | | | || || || || Sbjct 648774 GAATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAA 648833 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| | ||| |||||||| ||||||||||| || ||||| || |||||||| Sbjct 648834 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 648885 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | || || || | || | |||||||| || |||||||| ||||| | Sbjct 663619 TTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 663678 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | |||| | | || || || ||||| || ||| | || | || |||||||| | Sbjct 663679 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAG 663738 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||| || ||| || | | | ||||| || || Sbjct 663739 GAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAA 663798 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||||||| || || || | ||||||||||||||||||||| Sbjct 663799 CTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| | || ||||| | || | ||||| |||||||| ||||| ||||| | Sbjct 663849 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 663908 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | | || || || ||||| || ||| |||| | || || ||||| || Sbjct 663909 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 663968 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||| || ||||| | | | |||||| || || | Sbjct 663969 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 664028 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || |||||||| || || | |||||||||||| ||||||||| Sbjct 664029 TCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 >seq1766 Length=1490156 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||||||||||||||| | | || | || || ||||||||||| Sbjct 1263466 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTGTTTACCG 1263407 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || |||||||| ||||| || | || |||||||| |||||| |||| Sbjct 1263406 GCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 1263347 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || || ||| | ||||| ||||| || || | |||| Sbjct 1263346 ACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAGTT 1263287 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||||||||| Sbjct 1263286 TTGACGAAAATTTGCAT 1263270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||||||||| | | || | | || |||| ||||||||| Sbjct 1263238 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGTTTACCG 1263179 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||| ||||| || | || ||||| || |||||| ||| Sbjct 1263178 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTA 1263119 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || || ||| | ||||| ||||| || || | ||| Sbjct 1263118 ACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 1263059 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||||||||||||| Sbjct 1263058 TTGACAAAAATTTGCATT 1263041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||| | || || | || | || ||||| ||||||||||| ||||||| Sbjct 1263954 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCG 1263895 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | || |||||||||||||| ||| |||| | ||| |||||||| || Sbjct 1263894 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGG 1263835 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || ||||| ||| || | | | |||||| | || Sbjct 1263834 GAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAA 1263775 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || |||||||| || || | ||| || || |||||||||||| Sbjct 1263774 CCTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCATT 1263725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || ||||| ||||||||||| ||||| | | ||| | || || || ||| Sbjct 1263016 TGTAATGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGT 1262957 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | || | ||| |||||||| || | || || ||||| ||||||| Sbjct 1262956 TTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTC 1262897 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | | ||||| | ||| || | || || ||||||||||| Sbjct 1262896 GCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTC 1262837 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 || ||||||||||| || ||||| Sbjct 1262836 AATGTTTTGACAAAGATCTGCAT 1262814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414560517114814