Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1766 118 7e-22 seq2209 102 5e-17 seq2021 82.4 5e-11 >seq1766 Length=1490156 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| |||| || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || || || | ||| || ||| ||| || || | |||||| || | || Sbjct 1262980 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 1262921 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| | |||||| ||| ||| || || || | ||| Sbjct 1262920 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 1262861 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||||||||| ||||| || || | ||||| || || || |||||| |||| Sbjct 1262860 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTAT 1262808 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || ||||| || ||||| | ||||||||||||||| ||||| ||||| || Sbjct 1263952 CCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAA 1263893 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || |||| || || ||| ||| || || | |||||| || | ||| Sbjct 1263892 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGA 1263833 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || || ||| || ||| ||| || || | || ||| Sbjct 1263832 ATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACC 1263773 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||||||||||||||| || |||||||||||||| Sbjct 1263772 TCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||||||||| || | | || || |||||||| |||||| Sbjct 1264378 GTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCA 1264319 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | || || || | || || |||||||| || ||| |||| Sbjct 1264318 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 1264259 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| || || | || ||| || ||||| || |||||||| ||||||||| Sbjct 1264258 ACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTT 1264199 Query 33353 TTTACGAAAATTTGCAT 33369 || |||||||||||||| Sbjct 1264198 TTAACGAAAATTTGCAT 1264182 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | || || |||||||| ||||||||||| || | | | | Sbjct 1264168 CGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 1264109 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| |||||| ||| || || | || ||||| | || || |||||||| Sbjct 1264108 TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTG 1264049 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || ||| | || ||| || | ||| || Sbjct 1264048 TCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATA 1263989 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||||||||| |||||||||||||| Sbjct 1263988 GTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || ||||| || ||||| | ||| || |||||||| ||||| ||||| || Sbjct 1263724 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAA 1263665 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || |||| || || ||| ||| || || | |||||| || | || Sbjct 1263664 AGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGA 1263605 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || || ||| || ||| ||| || || | || ||| Sbjct 1263604 ATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACC 1263545 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 1263544 TCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 >seq2209 Length=4115427 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| || ||||| | ||| || || ||||| ||||| ||||| || Sbjct 648427 ACCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGA 648486 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || | || || ||| ||| || |||||||||||||| | || Sbjct 648487 GAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGG 648546 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || |||| ||| ||||| ||| || ||||| | || Sbjct 648547 AATTCCTTCTTTGTCCTGAATCTTAGCC---TTTACATTTTCTATTGTGTCTGAAGCTTC 648603 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || ||||| || ||||||||||| || ||||||||||| Sbjct 648604 AACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| ||||| |||||||| || ||||| || ||||||||||| | | | | || Sbjct 663407 CAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAGAGTGTCCTTCCATC 663466 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | ||| |||||| ||| || || |||||||| || | || || |||||||| || Sbjct 663467 TTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATC 663526 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 |||| |||| |||| ||| || || || | || ||| || || || || Sbjct 663527 TTGAATCTTAGCCT---TTACGTTTTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAAT 663583 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||||||||| || ||||||||||| Sbjct 663584 AGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 663619 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT- 33215 ||| |||| ||| | || || |||||||| ||||||||||| || | | ||| | Sbjct 664091 CAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGA----GTGTTCTTC 664146 Query 33216 CATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 |||| ||| ||| |||||| ||| || || |||||||| || | || || ||||||| Sbjct 664147 CATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCTTCTT 664206 Query 33273 TTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 | || |||| ||| ||||| | | || || || | || ||| || |||| Sbjct 664207 TATCTTGAATCTTAGCC---TTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAG 664263 Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || |||||||| || |||||||| || || |||||||| Sbjct 664264 TGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 >seq2021 Length=1035722 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 ||||||| ||||| || || || ||| | || || || |||||||||||| ||| | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | | ||||||||| || | ||||| |||||||| || ||| ||| || ||| Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 || || || | || || || ||||| || ||||| ||||| | |||||| || | Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 33360 AAATTTGCAT 33369 | || ||||| Sbjct 239383 ATATCTGCAT 239392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768155317038