Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1766 107 2e-18 seq2209 100 2e-16 >seq1766 Length=1490156 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| || | ||| || || ||||||||||| || ||||||||| | ||| | ||| Sbjct 1264166 CAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATC 1264107 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| |||||||| || ||| | || | |||||||| || || | ||||||||||| Sbjct 1264106 TTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTC 1264047 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| |||||| | ||| || |||| || ||| ||| | ||||| || Sbjct 1264046 TTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATAGT 1263987 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || | |||||||| |||||||||||| Sbjct 1263986 CTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || | ||| ||||||||||||||||| || ||||||||| | ||| |||| Sbjct 1263253 AAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCT 1263194 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || ||| | || | ||||||||||| || | |||||||| || Sbjct 1263193 TCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCC 1263134 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| ||| || | ||| | ||| || ||| ||| | ||||| ||| Sbjct 1263133 TGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTT 1263074 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || | ||||||||||||||||||||| Sbjct 1263073 TTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || ||||||||||| || ||||||||| | ||| | |||||| | || Sbjct 1263473 ATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTG 1263414 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| | || || ||||||||||| || | ||||||||||| |||||| Sbjct 1263413 TTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTT 1263354 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | ||| || | ||| | ||| || ||| ||| | ||||| ||||| || || Sbjct 1263353 TGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGT 1263294 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | |||||||| ||||||||||| Sbjct 1263293 AAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAATT 20063 || || || ||||||||||| || ||||||||| | ||| | | ||||||||||| Sbjct 1264384 TGAAGAGTCGATTCTTTTTGAATATTGTAATCGG--AAAGTGTACGTCCATCTTCCAATT 1264327 Query 20064 GTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTT 20123 |||| || ||| | || | ||||||||||| || | ||||||||||| ||||| Sbjct 1264326 GTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTT 1264267 Query 20124 TTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGG 20183 || ||| || | ||| | ||| || ||| ||| | ||||| ||||| |||| Sbjct 1264266 TTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGG 1264207 Query 20184 TCAACGTTTTGACAAAAATTTGCAT 20208 | | ||||| || ||||||||||| Sbjct 1264206 TAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || | ||| || ||||||||||| ||||||||||| || || |||||| Sbjct 1263726 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGG 1263667 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||||| ||||| || ||| |||| | || || ||||| | Sbjct 1263666 AAAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAG 1263607 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || || || ||||| ||| || | ||| || ||| | ||| Sbjct 1263606 GAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAA 1263547 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||||| || || | || || || ||||||||||| Sbjct 1263546 CCTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 >seq2209 Length=4115427 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | |||||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 663849 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 663908 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| | ||||||||| ||| |||| | | |||||||| || Sbjct 663909 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 663968 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||| || || || | | | || ||| || ||| | Sbjct 663969 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 664028 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || |||||||| || || | ||||||||||| ||||||||| Sbjct 664029 TCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| ||||| | |||||||| || || |||||||||||||| || || || ||||| Sbjct 648198 TTCCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTG 648257 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| | |||||| || ||| | || | | |||||||| | Sbjct 648258 AAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAG 648317 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||| || ||| || | | | | || || ||| Sbjct 648318 GAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAA 648377 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||||||| ||||| || | ||||||||||| |||||||| Sbjct 648378 CTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | ||||| || | ||| || ||||| ||||| || || || ||||| Sbjct 663619 TTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 663678 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || |||||| | ||||||||| ||| | || | | || ||||| | Sbjct 663679 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAG 663738 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||| || ||| || | | | | ||| || ||| Sbjct 663739 GAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAA 663798 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||||||| ||||| || | |||||||||||||||||||| Sbjct 663799 CTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| ||||| | ||||| |||| ||| || |||||||||||||| || |||||||| Sbjct 664075 TTCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTG 664134 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||| | |||||| || ||| | || | | || |||||| | Sbjct 664135 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAG 664194 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||| || || || | | | || ||| || ||| Sbjct 664195 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAA 664254 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || |||||||| || || | ||||||||||| ||||||||| Sbjct 664255 CTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574768549111