Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq613 111 1e-19 >seq613 Length=358256 Score = 111 bits (122), Expect = 1e-19 Identities = 166/227 (73%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 13388 TTAAATAAATAAttttttt-CCTTACTGT-----CTAAAATATAAGTATCTATCAATAAG 13441 ||||| ||||| ||| ||| |||| || | || |||||| ||||| || || || Sbjct 259974 TTAAA-AAATATTTTATTTACCTTTCTTTTGCATCTGCAATATATGTATCAATTAACAAA 260032 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||||||||||||||| ||||||||| || | ||| |||||||||||||| | ||| Sbjct 260033 GAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCC 260092 Query 13502 TCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| || || ||||| || | ||||| ||| | | || || || || || || || Sbjct 260093 TCTGTTATTTGTACTTCTTGACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATC 260151 Query 13561 ACTAGCAGCaaaaaaaGC-AAG-TATGTGCTTAATAAAttttttttC 13605 | ||| |||||||| || ||| ||| | | ||||| | |||||| Sbjct 260152 AGAAGCTGCAAAAAATGCTAAGACATGAGAT--ATAAAATGTTTTTC 260196 Score = 100 bits (110), Expect = 2e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | ||| |||||||||| ||||||||||| |||||||| ||||||| Sbjct 259214 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCTAAAGAAATATG 259273 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||| ||||| || ||||||| Sbjct 259274 TTCCATGAAATCAAACGGATTTT 259296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||| || ||||| || ||||| || || |||||||| |||| ||||| Sbjct 259697 TCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 259756 Query 13235 ATCCAAAATATAGCAGC-AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || ||||| || |||| | | | ||| ||| || ||||| ||||| ||||| || Sbjct 259757 AACCAGAAAATAGCGGCGAAACTACCACTAAAGAAA-ATACCTTCTACTGCAGCAAAAGC 259815 Query 13294 TATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGC 13353 | | | |||| | | ||| | ||| | | |||||| ||| ||||| | || Sbjct 259816 AACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAGC 259875 Query 13354 TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 ||||| | ||| || || |||||| || ||||||||||| Sbjct 259876 TTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATAA 259917 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 |||||||| |||||||||| | ||||| || |||||||| || || || || ||| Sbjct 259380 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 259439 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | | ||||||||| ||||| | || ||||| | || ||||||||||| | || ||| Sbjct 259440 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 259499 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 || | || || || ||| || | | | | ||||| | | | || ||| || | Sbjct 259500 ATTTTGACAGCATCCTTAATAATTGATGTGACT-CGTTCAC--AAGATGGTTTTTGTACA 259556 Query 13136 ---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 || || ||||| | ||||||||||||||| || ||||| Sbjct 259557 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 259597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969630934262