Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2087 132 6e-26 seq3 127 2e-24 >seq2087 Length=947496 Score = 132 bits (146), Expect = 6e-26 Identities = 214/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | |||||| | ||| ||||||| || ||||||| Sbjct 545188 ATTGGGATTTTCAAAAAATGGGAATTGGTGGATTGGATAAAGAATTTACTGCTATTTTCC 545247 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || | || ||||| || || |||| || || | | | |||| || ||||||| Sbjct 545248 GAAGGGCCTTTGCATCACGAGTTTTTCCACCAGAGATTGTTACACAATTGGGTTGTAAAC 545307 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || || || ||||||||||||||| || Sbjct 545308 ATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCTAGAC 545367 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| |||||||| ||| || | | Sbjct 545368 AAATAG-GAACTATGTTAAATGCTAGAGAACC--TAAAATCGTTAATGGCCCTCAAATCT 545424 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||| ||| |||||| || ||| || ||||||| Sbjct 545425 TGGATAAATATGTCGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCTGAAG 545484 Query 164690 AAGAA 164694 | ||| Sbjct 545485 AGGAA 545489 Score = 129 bits (142), Expect = 7e-25 Identities = 156/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT-- 164772 |||| ||||||| | ||| |||||||||| || |||||| |||| || || ||| Sbjct 545583 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAG 545642 Query 164773 -------GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | ||||| |||||||| | || || ||||| || ||| | ||||| || Sbjct 545643 TGTAGCTGGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGA 545702 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||||||| |||||||||||| | || | |||||||| || ||| ||| | || Sbjct 545703 TGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGAT 545762 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 ||||| |||||||||||||||||| ||||||| Sbjct 545763 AGATGAAGCTTTATTACGACCTGGTAGATTAGA 545795 >seq3 Length=676877 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | || |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 624623 TATATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTT 624682 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATAT 7294 | | || |||| || | || |||| || | || ||||||||||||| Sbjct 624683 CCCTATCTATAAAACCACAAGAATCTAAAAACTCACGCGAACTATTCGCATCCCAAATAT 624742 Query 7295 GTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTT 7354 | ||| |||| ||| || | |||||| |||||||||| |||||||| | || Sbjct 624743 GAACATCCTTTTCGCTTAATTTCTTTGCATTTGTGGATCCTTTAATAAACCATAACAATT 624802 Query 7355 CTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGTA 7407 | || |||| || |||||| | | ||||||||| ||||| || ||| || Sbjct 624803 CCTCCACTACACCTTTCCAAAATACACGTTTTGTAGTTAATAATGGAAATATA 624855 Score = 113 bits (124), Expect = 5e-20 Identities = 181/255 (71%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || || | || ||| |||| || | |||||| || | |||||| |||||||| | ||| Sbjct 624264 TGTGCCAGTATATAAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCC 624323 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAAT 7014 ||||| || |||||||||| ||| || ||||| |||| || |||||||| Sbjct 624324 ATATCCGCACTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTA---CATAAAAT 624380 Query 7015 TGACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCA 7070 ||| || | || |||||| |||||||| |||| | | |||||| ||||||||| Sbjct 624381 TGA-ACGAAACAATGACAAGGAGGTAA---AGCCATTTTTGGAATATCAATTGGATTCCA 624436 Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130 || ||||||| ||| | ||||||||| ||| | || ||| ||||| | || Sbjct 624437 TGCTGTCATTATAATTCTTCTATCATTGGGAGAATATCGTATTTTATCTATAACTTCTTT 624496 Query 7131 TAATTGATCTATACC 7145 ||||||||| ||||| Sbjct 624497 TAATTGATCAATACC 624511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595853892939600