Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1224 331 5e-86 >seq1224 Length=2167012 Score = 331 bits (366), Expect = 5e-86 Identities = 447/615 (73%), Gaps = 11/615 (2%) Strand=Plus/Plus Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 || ||||| | || ||| ||||| |||||||| || || ||| ||| ||||| Sbjct 323857 GCATTTTTCTTAAATCGAGCCGCTGTTAAAATGGCTAATATAGATAGAGCATGTAATTTT 323916 Query 3590 GTATTTACACGATTGAATG-AT---GGATCAAATGAATTGATATATTTTGCTGACGTATG 3645 | ||||| ||| ||| || ||| |||||| || |||||||||| || ||||| Sbjct 323917 ATGTTTACT-GATCGAAAACATTTGGGAAAAAATGAGTTATTATATTTTGCAGATGTATG 323975 Query 3646 CGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGG 3705 |||||| ||||||||||||||||||||| | | ||||||| |||||| || ||||| Sbjct 323976 CGCTGGACCAGGTGGTTTCAGTGAATATGTTCTTTGGAGAACAAAATGGCATGCTAAAGG 324035 Query 3706 TTATGGTATGACGTTACGCGaaa--aaaaTGATTTTCAACTGAACAGA-TTTTACGATAA 3762 | |||| | || || | ||| ||||||||||| || | | | || ||||| | | Sbjct 324036 ATTTGGTTTTACATT--GAAAAATGAAAATGATTTTAAATT-AGCTGACTTTTATGCTGG 324092 Query 3763 CTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTC 3822 | | | ||||| || || || |||||||| || | ||||| || ||| |||| Sbjct 324093 TTCTCCTGAAACATTTCATCCATATTATGGACCAAAAGATAATGGTGATGTCTTTGATTC 324152 Query 3823 ACAAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACA 3882 ||||||| | | ||| | ||| | || |||||| |||| | ||||| ||||| Sbjct 324153 TGAAAATCAAAGAACATTTAGAGAACTTATAATGAAATATACTCATAATAAAGGAGTACA 324212 Query 3883 TTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTT 3942 |||||||||| |||| ||||| || || |||||||| |||||||| | |||||||| | Sbjct 324213 TTTTATGATGTCTGATGGTGGTTTTTCTGTTGAGGGAAAAGAAAATTTACAAGAAATTCT 324272 Query 3943 ATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGG 4002 || ||| | ||||| | |||||||||||| | ||||| ||||| || || || Sbjct 324273 TTCAAAACAATTGTATCTTTGTCAATGTTTAGTGGCATTAATGATAGTAAGAGAGAAGGG 324332 Query 4003 TCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTT 4062 ||||| ||||| ||||| || || ||||||||||| ||||||||||||||| | ||||| Sbjct 324333 TCATTTTGTTACAAAATTATTTGACATATTTACACCCTTTAGTGCTGGTTTAATCTATTT 324392 Query 4063 GATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAA 4122 |||||| ||| |||| | ||||||||||| |||||| | || || |||| || || Sbjct 324393 AATGTATCGATGTTTTGACGAAATTTGTATTTTTAAACCAAACTCTTCTAGACCAGCAAA 324452 Query 4123 TTCTGAAAGATATTT 4137 ||| ||| | ||||| Sbjct 324453 TTCAGAACGTTATTT 324467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276545406321793