Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2209 120 2e-22 seq1987 118 6e-22 seq224 118 6e-22 seq1446 114 7e-21 >seq2209 Length=4115427 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 3322321 TAATAAAAAAA-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 3322379 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||| |||||||||||||||| Sbjct 3322380 CGACGCTCTAACCTACTGAGCTAATGGGCC 3322409 >seq1987 Length=4622889 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 583771 AAAAAAT-AATTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 583713 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 583712 GCTCTAACCAACTGAGCTAATGGGCC 583687 >seq224 Length=3331288 Score = 118 bits (130), Expect = 6e-22 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| ||||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 2782604 AATTA-TAAAAAAGAATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 2782662 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 2782663 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 2782696 >seq1446 Length=1996334 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1867986 AAAAAAAGAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1867927 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1867926 CGCTCTAACCAACTGAGCTAATGGGCC 1867900 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1844253 AAAAAAAAACTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 1844194 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||||||||| Sbjct 1844193 CTCTAACCTACTGAGCTAATGGGCC 1844169 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483452587756