Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2209 152 5e-32 seq1766 132 4e-26 seq2420 82.4 7e-11 >seq2209 Length=4115427 Score = 152 bits (168), Expect = 5e-32 Identities = 180/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | || |||||| || || | |||||||||||||| | Sbjct 663836 AAAAATTTGCATACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGAT 663895 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | | |||||| | ||| || || ||||| || |||| || |||| | Sbjct 663896 ATTATAATC--TGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGT 663953 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||| ||||| |||||||| || | ||| || ||||| || | | ||| Sbjct 663954 TGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTA 664013 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| ||||||||||||||||| |||||||| |||||||| ||| Sbjct 664014 TCTGAAGCTTCAACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGC 664073 Query 95006 AT 95007 || Sbjct 664074 AT 664075 Score = 143 bits (158), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| |||| | || ||| |||| || | ||||||||| ||||| | || | Sbjct 664069 TTTGCATTCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGT 664128 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | | |||||| ||| || || |||||||| ||||||| |||| |||||| Sbjct 664129 AATC--TGAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTG 664186 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| |||||||| |||||||| || | ||| || ||||| || | | ||| || | Sbjct 664187 ATCGGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGA 664246 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| ||||||||||||||||| |||||||| |||||||| ||||| Sbjct 664247 AGCTTCAACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 138 bits (152), Expect = 1e-27 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 94776 ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAAT 94835 || ||||||||| | || ||| ||||||||||| |||||||| || || | || |||| Sbjct 663388 ACTCTCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAAT 663447 Query 94836 CGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || | ||||| | ||| || || |||||||| |||| || |||| ||||||||| Sbjct 663448 --CTAAGAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATC 663505 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 |||||||| |||||||| || | ||| || ||||| ||| | | || || | Sbjct 663506 AGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGC 663565 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| || || || ||||||||||||||||| ||||| || ||||| Sbjct 663566 TTCAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 663619 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || ||| || || || | |||||||||||||| | |||| Sbjct 648420 TTTGCATACCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTAT 648479 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| || |||||||| || |||| || || | |||||| | Sbjct 648480 AATCTGAGAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGT 648539 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||||||||| | ||| || ||||| || | | ||||| | Sbjct 648540 CAGGAGGAATTCCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAG 648599 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 648600 CTTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Score = 122 bits (134), Expect = 8e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 ||| |||| ||| |||| | || |||||| ||||| | |||||||| || || | || Sbjct 648190 ATTATACATTCCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATT 648249 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| | ||| || || ||||| || |||||||||| | ||| || Sbjct 648250 ATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 648309 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||||||| |||||||| || | ||| || || || || | | ||||| | Sbjct 648310 ATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGA 648369 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 648370 AGCTTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 107 bits (118), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | || ||| || | || | |||||| || || || | Sbjct 648643 AAAAATTTGCATTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAAT 648702 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | | |||||| | ||| || || ||||| || |||| || || | | Sbjct 648703 ATTATAATC--TGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGT 648760 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||| ||||| || ||||| || | ||| || || || || | | ||| Sbjct 648761 TGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTG 648820 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||||||||| || | ||| || |||||||||||| Sbjct 648821 TCTGAAGCTTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGC 648880 Query 95006 AT 95007 || Sbjct 648881 AT 648882 >seq1766 Length=1490156 Score = 132 bits (146), Expect = 4e-26 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| |||||||| ||||| || || || | || ||||| ||||| | Sbjct 1263736 AAAATTTGCATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATA 1263677 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||||||| | || || || ||| ||||||||||| || |||| || ||||||| Sbjct 1263676 TTATAATCGG--AAAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTT 1263619 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||||||||||||||| || || || | ||||| | || || | | ||| | Sbjct 1263618 GCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTAT 1263559 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || || | || ||||||||||| |||||||| || || || || |||| Sbjct 1263558 CAGATGCTTCAACCTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCA 1263499 Query 95007 T 95007 | Sbjct 1263498 T 1263498 Score = 127 bits (140), Expect = 2e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 1263964 AAAATTTGCATTCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATA 1263905 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 |||||||| | ||||| || ||| ||||||||||| || |||| || ||||||| Sbjct 1263904 TTATAATCCG--AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTT 1263847 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| |||||||| || || || | ||||| | || || | | ||| | Sbjct 1263846 GCTGATCTGGGGGAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTAT 1263787 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || || | |||||||||||||| |||||||| || || || || |||| Sbjct 1263786 CAGATGCTTCAACCTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCA 1263727 Query 95007 T 95007 | Sbjct 1263726 T 1263726 Score = 120 bits (132), Expect = 3e-22 Identities = 176/247 (71%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| ||||| || |||| || || || || || || || ||||| | Sbjct 1263053 AAAAATTTGCATTCCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAAT 1262994 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| ||| ||| | ||| || || ||||| || ||||||| |||||| Sbjct 1262993 ATTATAATCAG--ATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTT 1262936 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| ||||| ||||| | |||||| || || || | | || Sbjct 1262935 TGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTA 1262876 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || || ||||| || || | ||||| |||||||||||| Sbjct 1262875 TCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGC 1262816 Query 95006 ATGCTTA 95012 ||| ||| Sbjct 1262815 ATGATTA 1262809 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | || |||||| | ||||| | ||| |||| Sbjct 1264385 GTGAAGAGTCGATTCTTTTTGAATATTGTAATCGG--AAAGTGTACGTCCATCTTCCAAT 1264328 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 |||||||| ||||||| ||||| || ||||| |||||||||||||||||||| | |||| Sbjct 1264327 TGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATT 1264268 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||||| || || | | || |||| || || |||| || || |||||||| Sbjct 1264267 TTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCG 1264208 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| || || || ||||| Sbjct 1264207 GTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||| ||||| | || |||||| | || || || ||| || |||||||| | Sbjct 1263466 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGAGTACGACCATCTTCTAGCTGTTTAC 1263409 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||| | ||| || ||||| || ||||||||||||||||| | ||||||||| | Sbjct 1263408 CGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTT 1263349 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | || |||| || || |||| || || |||||||| ||||||| Sbjct 1263348 TTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAG 1263289 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||| || || || ||||| Sbjct 1263288 TTTTGACGAAAATTTGCAT 1263270 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||| ||||| | || |||||| | ||| | ||| |||| |||||| ||| Sbjct 1263238 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGTTTACCG 1263179 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| || ||||| ||||||||||||||||| || | |||||| || || Sbjct 1263178 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTA 1263119 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | || || || | || || ||||||||||| || ||| Sbjct 1263118 ACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 1263059 Query 94991 TTCACAAAGATCTGCAT 95007 || ||||| || ||||| Sbjct 1263058 TTGACAAAAATTTGCAT 1263042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | | |||||| || | || | || ||||| ||||| | Sbjct 1264192 AAAATTTGCATACCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATA 1264133 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || |||||| | || || || ||| || | |||||||| ||||||| ||||| | Sbjct 1264132 TTGTAATCGG--AAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCT 1264075 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || || |||||||||||||||||||| | |||||| || || || | | ||| | Sbjct 1264074 GTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTAT 1264015 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | || || || ||||| ||||||||||| || || || |||| Sbjct 1264014 CGGAAGCTTCAACTTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCA 1263955 Query 95007 T 95007 | Sbjct 1263954 T 1263954 >seq2420 Length=677074 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || || || || | |||||| || || ||||||||||| || | |||||||| | Sbjct 459227 CCACCCCTTAAACGTAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATC--TG 459170 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| | ||| |||| |||||||| |||||||||||||||| ||| | || | Sbjct 459169 AAAGTGTCCTACCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGACCAGGTG 459110 Query 94899 GAATACCT 94906 |||| ||| Sbjct 459109 GAATTCCT 459102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277577551160