Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq113 185 1e-42 >seq113 Length=3423559 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| |||||||||||||| ||||| || ||||| || Sbjct 2417798 GCAAAGCGTCATAGAAAAGTACTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATT 2417857 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || || ||| | ||||| || | |||||||| | | Sbjct 2417858 CGTCGATTGGCTCGTCGTGGCGGTGTTAAACGTATATCTGGTTTAATTTATGAAGAAACT 2417917 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||| | ||| | | | ||||||| ||||| | || ||||| Sbjct 2417918 CGCGGTGTTTTGAAAGTTTTCTTAGAAAATGTTATCCGCGATGCAGTTACTTACACCGAA 2417977 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || ||||| || | |||||| |||| ||||| ||||| | ||||| Sbjct 2417978 CACGCCAAACGGAAAACTGTAACGGCTATGGATGTCGTATATGCTCTGAAAAGGCAAGGA 2418037 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||||||| ||||| Sbjct 2418038 CGTACTCTTTATGGTTTTGGAGGTTAA 2418064 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| || ||||| ||||| || Sbjct 1745528 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATTACCAAACCAGCCATT 1745587 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || |||||| | ||||||||| |||| ||||| | Sbjct 1745588 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATTTCTGGATTGATCTACGAAGAAACA 1745647 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| | ||| | | | ||||||| |||||| || || || ||| Sbjct 1745648 CGAGGTGTATTGAAGGTATTCTTGGAAAATGTTATCCGAGATGCTGTCACTTACACTGAG 1745707 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||||||| || |||||||| | || || || ||||| |||||||| Sbjct 1745708 CATGCCAAGAGGAAGACTGTAACTGCCATGGATGTAGTTTACGCTTTGAAGCGTCAAGGA 1745767 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| |||||||| |||||| Sbjct 1745768 AGAACCCTTTACGGTTTTGGTGGTTAAT 1745795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072977319683