Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1876 89.7 8e-13 >seq1876 Length=4749213 Score = 89.7 bits (98), Expect = 8e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCT 193940 ||||| || ||| ||| |||||| | | |||||| | || ||||| | ||| Sbjct 420252 GCAAAATTATATAGTTTTTGGATTGTAATAAATTATAGAGAAGCATATAATATGTTTGCT 420311 Query 193941 AGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGT 194000 || ||||||| | || ||||| ||| ||| | ||||| |||| ||||| || | Sbjct 420312 TGTAATGGTATTTTATTTAATCATGAAAGTCCTCGTAGAGGAGAGAATTTTGTTACAAGA 420371 Query 194001 AAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT 194060 || | || | | || | ||||| | |||| ||||| | |||||| | | || Sbjct 420372 AAAGTGACCAGATCTATAGCAAAGATACATCTTGGTTTACAAGACATTCTTGAATTAGGA 420431 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAG 194109 ||| | ||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 420432 AATTTAGATGCTAAACGAGATTGGGGACATGCAAAAGATTATGTTGAAG 420480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807530660416360