Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq613 113 5e-20 >seq613 Length=358256 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| || || | ||||| || |||||||| | |||||| Sbjct 260035 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTC 260094 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 || ||| || || | |||||||| | | | || ||||| || ||||||||| Sbjct 260095 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGA 260154 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| || | || |||||||| | ||| | || ||||| || || Sbjct 260155 AGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTTTCACTGTCAGTTAAATTATT 260214 Query 21949 CCAATCTAATAAATC 21963 |||||| |||| ||| Sbjct 260215 CCAATCAAATACATC 260229 Score = 100 bits (110), Expect = 3e-16 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 21281 TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATT 21340 || |||||||| | |||| | |||||||||||| |||||||| |||||||||||||| Sbjct 259380 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 259439 Query 21341 AATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT 21400 | || ||| ||||| || |||| || ||||| | || | ||| ||||| || ||| Sbjct 259440 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 259499 Query 21401 ATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGG-----ATACA 21455 || ||| || || ||| ||| || || | | || || || |||| Sbjct 259500 ATTTTGACAGCATCCTTAAT--AATTGATGTGACTCG-TTCACAAGATGGTTTTTGTACA 259556 Query 21456 ATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 || ||||| ||||| |||||||||||||||||||| || || Sbjct 259557 AT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 259597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||| | |||| ||||||||| || | ||| ||||||| || || ||||| || ||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGA 21270 || || ||| |||||| |||||||| ||||||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGA 259300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531884636864440