Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq69 149 8e-31 seq613 143 3e-29 >seq69 Length=621926 Score = 149 bits (164), Expect = 8e-31 Identities = 169/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303 || || || ||| || ||| ||||| ||| || || || |||| ||| | | | | Sbjct 549455 TGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTT 549396 Query 62304 TCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||||| ||| ||| || || ||||| || |||||||| ||||| |||| |||||| Sbjct 549395 TCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 | ||||| ||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62466 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 549233 Score = 147 bits (162), Expect = 3e-30 Identities = 226/315 (72%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || || ||||| | ||||||||| | ||| || |||| |||| ||||| || ||| | Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 547317 Query 63462 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 | || || || |||||| | || | | || || || || || || ||| Sbjct 547316 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 547258 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTT 63577 || | ||| |||| |||||| |||||||| || || || || ||||| || ||| |||| Sbjct 547257 ATAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 547198 Query 63578 AAGTAGAAAACAGCT 63592 || || ||||||||| Sbjct 547197 AA-TAAAAAACAGCT 547184 Score = 127 bits (140), Expect = 3e-24 Identities = 265/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 62797 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 548681 Query 62854 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 548680 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 548621 Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62967 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 548620 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 548561 Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 548560 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCA 548501 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 548500 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Query 63088 TTATTATAGATTTGTATCTCCTTTCTCTTTC 63118 ||| ||| ||||| |||||| ||| Sbjct 548440 GAATTTGTCGTTTATATCT--TTTCTCATTC 548412 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | ||| || | | ||| || || || |||||| ||| ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 63831 TAAATAAT 63838 ||||| || Sbjct 546876 TAAATTAT 546869 Score = 100 bits (110), Expect = 4e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||||||| | ||| || || | |||||||||| |||| |||||| |||||| | Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 547999 ATAGAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || || |||| |||| | | ||| |||||||| || || ||||| ||| Sbjct 549043 CCTTCATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCA 548984 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 548983 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 548924 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 |||||| | | || ||| || || || | ||||||| |||||||| Sbjct 548923 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 549730 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 549671 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| |||||| || || || || | ||||| |||||||||| || | | Sbjct 549670 TTAATGATTGCGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 549611 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62211 ||||||| |||||||||| |||||||||| Sbjct 549610 TTTGTGGTATTTCCCAAACTGTTTTATAAA 549581 >seq613 Length=358256 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||| || ||| ||||| || || | | ||||||||| ||||||| ||||| ||||| Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 | ||||| || || ||||| | ||||| || || ||||||||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | | ||| ||||| || ||||| ||| ||||||||||| || || ||||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 33744 AAAATATTTTTCGTCTG-GTGTTAGTTTATTCCAATCA 33780 ||||| |||||| ||| |||| |||||||||||| Sbjct 260185 AAAATGTTTTTC-ACTGTCAGTTAAATTATTCCAATCA 260221 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| || ||| |||| || || |||| |||||||||| ||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 260414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| |||||| |||||| ||||| ||||| |||||| || || || ||||| ||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 || || |||| ||||||||||||||||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| || || ||| || || ||||| ||||| || || | ||||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || || | ||||| ||| |||||| || ||||||||||||||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502 ||| | | || | || || || ||||| |||||| ||| ||||||| | Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 | || ||| ||||| |||| |||| || || ||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAA 259914 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159 ||| ||| |||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG- 33278 ||||||||||| || ||||| | ||||| ||| | || | ||||| | ||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 259547 Query 33279 --ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 259548 TTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928270191960