Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 >seq3 Length=676877 Score = 114 bits (126), Expect = 3e-20 Identities = 162/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | || ||||| || || |||||| || | || || ||| | | ||| Sbjct 624851 TTTCCATTATTAACTACAAAACGTGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 624792 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA--ATGTAAAAATTTGGG 111432 |||||| ||| ||||||||||| ||| || ||| |||| |||| | ||||||| Sbjct 624791 TTTATTAAAGGATCCACAAATGCAAA-GAAATTA-AGCGAAAAGGATGTTCATATTTGGG 624734 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTG 111492 ||| ||| | || ||||| ||| ||||||| |||| || | || | |||||||| | Sbjct 624733 ATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGGGAAGAAGGAG 624674 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || | || || |||| |||||||||||| | || ||||||||| Sbjct 624673 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCA 624630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303313004201042