Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2209 136 3e-27 seq1766 109 5e-19 seq2021 82.4 6e-11 >seq2209 Length=4115427 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC--CA 115343 |||||||||||||||||||| ||||| || || ||||||||| | ||| || | || Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | || || || ||| || ||| ||||||||||| | || |||| Sbjct 663787 GATACAATA---GAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGAT 663731 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| || | || | ||| ||||||||| | ||||||| | ||| | | |||||| Sbjct 663730 CAGCAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 663671 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||| |||||||||||| | ||| | || |||||| | |||||||||| Sbjct 663670 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGAA 663619 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||||||||| ||||| ||||||||||| || | ||| || | Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| | | | ||||| || ||| ||||||||||| | || ||||| Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCA 664185 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| || | || | ||| || |||||| | ||||||| | ||| | | ||||| || Sbjct 664184 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 664125 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||| |||||| | ||| |||| |||||| | ||||| |||| Sbjct 664124 TATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGGAA 664075 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 115281 TAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGT 115340 |||||||||| || ||||| || || | || ||||||||||| ||| | ||| || Sbjct 648887 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 648828 Query 115341 CCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | ||||| | | | |||||| || ||| |||||||| || | || | Sbjct 648827 CTTCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAG 648768 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||| ||| | | |||| ||| ||||||||| | ||||||| | ||| | | |||| Sbjct 648767 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 648708 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| ||||| |||||||||||| | ||| | || |||||| | |||||||||| Sbjct 648707 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGAA 648654 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||||||||| ||||| ||||||||||| || | ||| || | Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| | | | ||||| || ||| ||||||||||| | || ||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| ||||||||| | ||||||| | ||| | | |||||||| Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || ||||| | ||| | ||||||||| | ||||||| Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| || || ||||||||| | ||| || | Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 648307 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||| ||||||||| | ||| | | |||||||| Sbjct 648306 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAT 648247 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| ||||| | || | ||||||||| | ||||| |||| Sbjct 648246 ATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGGAA 648198 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| || || ||||| || ||||| | ||| || | Sbjct 663620 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 663561 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | ||||| || ||| ||||||||||| | || |||||| Sbjct 663560 GGATACAATAGAAAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 663501 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| || | |||| ||| || |||||| | ||||||| | || | ||||| || Sbjct 663500 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACAA 663441 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||||| ||||| ||||| | || |||| |||||| | ||||||||| Sbjct 663440 TATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGGA 663392 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| || || || ||||| || || | ||| || | Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | ||||| || ||| || |||||||| | || ||| || Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCA 648536 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | | |||| ||| || ||||| ||||||||| | ||| | | |||||||| Sbjct 648535 GCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAA 648476 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||| | ||| | || |||||| | ||||||| Sbjct 648475 TATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| ||||| |||||||| ||||| | ||| || | Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | || ||| |||||| ||||||||||| | || |||||| Sbjct 1263101 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 1263160 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | || | ||| || ||||| || ||||||| | || | ||||||| || Sbjct 1263161 ACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 1263220 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||||| ||||| Sbjct 1263221 TATTCAAAAAGAATCTAC 1263238 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| || ||||||||||| ||||| | ||| || | Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | |||||| ||||||| || |||||||| | || |||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| || ||||| ||||||||| || | ||||||| || Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||||||||| || || Sbjct 1263450 ATTCAAAAAGAATCAAC 1263466 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || || || |||||||||||||| || | || || | Sbjct 1263725 AATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATC 1263784 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | || ||| ||||| ||||| || || | ||| ||||| Sbjct 1263785 TGATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCA 1263844 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | |||| ||| || ||||| | ||||||| || | | |||||||| Sbjct 1263845 GCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAA 1263904 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||||| || ||||| | || ||| | ||| |||| |||| Sbjct 1263905 TATTCAAAAAGAGTCGACACTACATTTAGTATTGCGTTTGAGAGGTGGAA 1263954 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || ||||||||||||||||| | || || | Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT 1263557 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | || ||| ||||| ||||| || || | || |||||| Sbjct 1263558 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1263617 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || ||||| | ||||||| || | |||||||||| Sbjct 1263618 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAAT 1263677 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||| || || ||||| | || ||| | ||| |||| |||| Sbjct 1263678 ATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGAA 1263726 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| |||||||| || || ||||| || ||||| | ||| || | Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| ||| | | || ||| |||||| || |||||||| | || ||| || Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1264072 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | || | ||| || |||||||||||||||| || | ||||||| || Sbjct 1264073 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAA 1264132 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || | ||| | || ||| || | || || || Sbjct 1264133 TATTCAAAAAGAATCAACCCTCCATCTTGTTTTGCGACTTCGTGGTGG 1264180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| || || |||||||| ||||| | ||| || | Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | |||||| ||||||| || |||||||| | || |||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | ||| || |||||||| ||||||| || | ||||||| || Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACAAT 1264361 Query 115466 ATTCAAAAAGAGTCTACT 115483 ||||||||||| || ||| Sbjct 1264362 ATTCAAAAAGAATCGACT 1264379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || ||||| || || | || ||| || Sbjct 1262814 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 1262873 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | |||||| |||||| || || ||||| | || |||||| Sbjct 1262874 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 1262933 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | ||| || |||||| ||||||||| || | | |||||||| Sbjct 1262934 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAAT 1262993 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||||| || ||||| | || || | || |||| |||| Sbjct 1262994 ATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTAAGAGGTGGAA 1263042 >seq2021 Length=1035722 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| | ||||| ||||| || || | ||| || | Sbjct 239392 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCA 239333 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| | | | | || ||| |||||| ||||||||||| | || ||||||| Sbjct 239332 GATACTATAGAAAATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAG 239273 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| ||| || || ||||||||||||| || | | || ||||| Sbjct 239272 CAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTATAAT 239213 Query 115466 ATTCAAAAAG 115475 |||||||||| Sbjct 239212 ATTCAAAAAG 239203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425331397987720