Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1766 89.7 5e-13 >seq1766 Length=1490156 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || || |||||||| ||||||||| Sbjct 1263496 CCACCTCGAAGACGTAGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 1263437 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||||||| || || || |||| | | ||| || || || || Sbjct 1263436 AGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGA 1263377 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| ||| || | | || | ||||| | | || | Sbjct 1263376 ATACCTTCTTTGTC-TTGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAAC 1263318 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || |||||||| |||||||| ||||| Sbjct 1263317 TTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || | ||| | ||| || || |||||||| ||||||||| Sbjct 1264180 CCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 1264121 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || || |||| || | ||| ||||| ||||| Sbjct 1264120 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 1264061 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | || | |||||||| | || | Sbjct 1264060 ATACCTTCTTTGTC-TTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAAC 1264002 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || |||||||| |||||||| ||||| Sbjct 1264001 TTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||| || |||||||| ||||||||| Sbjct 1264408 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAA 1264349 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || |||| || | ||| || || ||||| Sbjct 1264348 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 1264289 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| ||| || | | || | ||||| | | || | Sbjct 1264288 ATACCTTCTTTGTC-TTGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAAC 1264230 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| ||||| |||||||| |||||||| ||||| Sbjct 1264229 TTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998456711040