Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq69 154 2e-32 seq613 152 7e-32 >seq69 Length=621926 Score = 154 bits (170), Expect = 2e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158 || || || ||| || ||| ||||| ||| || || || |||| ||| | | | | Sbjct 549455 TGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTT 549396 Query 62159 TCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || |||||| ||| ||| || || ||||| || |||||||| ||||| |||| |||||| Sbjct 549395 TCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 | ||||| ||||| ||||| || ||||| | ||| ||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62321 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 549233 Score = 143 bits (158), Expect = 3e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 547317 Query 63317 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | || || || |||||| | || | | || || || || || || ||| Sbjct 547316 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 547258 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 63432 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| |||| Sbjct 547257 ATAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 547198 Query 63433 AAGTAGAAAACAGCT 63447 || || ||||||||| Sbjct 547197 AA-TAAAAAACAGCT 547184 Score = 127 bits (140), Expect = 3e-24 Identities = 265/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||||||||| ||| || || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 62652 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 ||| |||||||| | ||||| | | |||||| |||| || | | ||||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 548681 Query 62709 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 62762 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 548680 GAAAATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 548621 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 548620 TACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 548561 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 ||| || ||||||| |||||| ||||| || || || ||| |||||||| | Sbjct 548560 TCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCA 548501 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 548500 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Query 62943 TTATTATAGATTTGTATCTCTTTTCTCTTTC 62973 || | | | ||| ||||||||| ||| Sbjct 548440 GAAT--TTGTCGTTTATATCTTTTCTCATTC 548412 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| || | | ||| || || || |||||| ||| ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 63686 TAAATAAT 63693 ||||| || Sbjct 546876 TAAATTAT 546869 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||||||| | ||| || || | |||||||||| ||| |||||| |||||| | Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 547999 ATAGAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| |||| | | ||| |||||||| || || ||||| ||| Sbjct 549043 CCTTCATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCA 548984 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||| | ||||| || || | |||| || | ||| ||||| || |||||| Sbjct 548983 CCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 548924 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 548923 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 549730 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 549671 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| |||||| || || || || | ||||| |||||||||| ||| | | Sbjct 549670 TTAATGATTGCGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 549611 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 ||||||| |||||||||| |||||||||| Sbjct 549610 TTTGTGGTATTTCCCAAACTGTTTTATAAA 549581 >seq613 Length=358256 Score = 152 bits (168), Expect = 7e-32 Identities = 166/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||| || |||||||||||| || | | ||||||||| ||||||| ||||| ||||| Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 | |||||| || || || || | ||||| || || ||||||||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | | ||| ||||| || ||||| ||| ||||||||||| || || ||||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 33101 AAAATATTTTTCGTCTG-GTGTTAGTTTATTCCAATCA 33137 ||||| |||||| ||| |||| |||||||||||| Sbjct 260185 AAAATGTTTTTC-ACTGTCAGTTAAATTATTCCAATCA 260221 Score = 123 bits (136), Expect = 3e-23 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| || ||| | ||||||| ||||||| |||||||||| |||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 260415 Score = 102 bits (112), Expect = 1e-16 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||||| | || ||||| || ||||||||||| |||||||| |||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 32635 ||||||||||| ||| || || | ||||| ||| | || | ||||| | ||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGAC---TCGTTCACAAGATGGT 259547 Query 32636 ----ATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 |||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 259548 TTTTGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| |||||| ||||| ||||| |||||| || || || ||||||||||| Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 ||| || |||| |||||||||||| || ||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612745507600